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PNNL-CompBio
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SERGIO
A simulator for single-cell expression data guided by gene regulatory networks
GNU General Public License v3.0
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replace np float and int
#17
augeorge
opened
4 months ago
0
numpy deprecation
#16
augeorge
opened
4 months ago
0
Make fadB a downstream regulatee of fadR
#15
djinnome
opened
5 months ago
1
Crisp rai perturbation analysis
#14
djinnome
opened
5 months ago
0
Run SERGIO with CRISPRa/i gene perturbations.
#13
djinnome
opened
7 months ago
7
add requirements file and update readme
#12
augeorge
closed
9 months ago
0
requirements.txt to install dependencies
#11
augeorge
closed
9 months ago
1
Regnet in pyro
#10
djinnome
opened
1 year ago
1
discretize data to use discrete conditional independence test
#9
djinnome
opened
1 year ago
1
Generate a table for all conditional independencies x transformations
#8
djinnome
opened
1 year ago
0
Add feature to replace Hill equation dynamics with Lotka-Volterra equation dynamics
#7
djinnome
opened
1 year ago
0
get.data.celltype incorrectly parses the columns`
#6
djinnome
closed
1 year ago
2
Jz parse dagitty
#5
djinnome
closed
1 year ago
0
Questions to answer with the tyrR dataset
#4
djinnome
opened
1 year ago
1
Convert interactions file
#3
djinnome
closed
1 year ago
2
Apply localTests to Ecoli model and keep track of unfaithful conditional independencies as a function of data size
#2
djinnome
opened
1 year ago
0
write a function to take as input a conditional independency, a graph, and data, return true or false.
#1
djinnome
closed
1 year ago
1