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Hi all!
In this issue I would like to discuss the design of the networks/graphs API for Vispy. I know @jvtrudel has got some ideas about that, but maybe other people also have some ideas about this.
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Continued from #1.
So I'm hesitant about the separate metadata files, as IMHO it's very important to keep the metadata attached to the coordinates throughout the pipeline. Ideally, the metadata-da…
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The authors present a python PB solver based on a fast multipole method library and a Galerkin boundary element method package. The method integrates a python interface with optimized computational ke…
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This issue is part of an effort to reconcile the current [structural_variant database model](https://github.com/cBioPortal/cbioportal/blob/87e5a228d80a31515bf1a3e762bd2d70db89d2fb/db-scripts/src/main/…
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- [x] It might be helpful to add an annotation behind each parameters, particularly, for some abbreviations. (e.g. what does "facestall" and "backstall" mean, and I guess 'LEF' means loop extrusion f…
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e.g. genomes
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### Background
A biological pathway is a network consisting of interactions between biological molecules (e.g. proteins and chemicals) in a cell that lead to a certain product or a change. Research…
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I'm fairly certain a good number of these exist in STRING and I think it would be a very helpful annotation on embedding visualizations (i.e. it would be good context to know which clusters are differ…
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A couple of outstanding issues with the current spec from https://github.com/ome/omero-ms-zarr/issues/76#issuecomment-722279765 that we may want to fix before "v0.2" since they are breaking changes.
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Apparently REVIGO has changed format of the file that is obtained by pressing Export results to text table (CSV) in the web interface. Colum `representative` in revigo.csv file now lists GO ids inste…