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Decomposing an heterozygous variant with two alts results in many "ref/." genotypes, which should probably be given a different gt_types than for "ref/alt" (1).
Also it is not clear in the docs what…
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This is a meta-issue recording action items from a review of biomedical articles that cite SciPy and the results of a survey sent to authors of over 50 of these papers. In some cases, we can offer to …
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Hello,
Thank you for the open code. I read two references of MTF and your code, but I still don't understand how to get MTF.
Could you help me by listing mathematical calculations?
Could you expla…
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Hi,
I'm sorry for opening another issue, but I'm not able to understand why there is a segmentation fault when launching some examples. I tried to ran different examples always obtaining the follow…
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Hi,
Thank you for the amazing tool.
I was wondering if it is possible to compute hicPCA or hicCompartmentalization on matrix with limited interaction range (ex. use interactions between loci less …
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Hello everyone,
while running a simulation I came across an error that I do not know what it means at all. Can anyone point me to the right direction?
The simulation is a simple square prism w…
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Dear all,
I wanted to use BGLR to estimate the genome-wide variance explained of a trait by SNPs and DNA methylation . A colleague and I noticed that BGLR estimates substantial SNP heritability or …
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Currently we don't test the examples in the docstrings. Hence, it's unsurprising that most of these examples are broken:
(running from #1413)
```bash
~/Python/hyperspy3$ ana3-py.test hyperspy --do…
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I think the coroutine library is missing a simple solution to use parallel decomposition on the contents of a large list without saturating the dispatcher queue, so that other coroutine work won't be …
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I am trying python bindings on Docker on M1 mac with amd64 image.
If anyone can hint next step for debugging, I would greatly appreciate it.
I do suspect side effect of emulation for now.
- Hos…