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arq5x
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gemini
a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
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Installation Error
#959
ukesh-sys
opened
1 year ago
0
ValueError: Processing failed on GEMINI chunk load
#958
tanayb001
opened
1 year ago
3
Gemini not found error while loading chunks from VCF
#957
frankMusacchia
opened
2 years ago
4
Failed fresh installation v0.30.2
#956
eddgeag
opened
2 years ago
0
facing traceback and 'syntax error' while running this code - gemini load --cores 3 -t snpEff -v $NORMVCF $db
#955
monika7697
opened
2 years ago
0
Gemini load error with MuTect2 vcf 4.2
#954
2bittofa
opened
3 years ago
0
on Galaxy platform: ValueError: processing failed on GEMINI chunk load
#953
Hawke996
opened
3 years ago
0
uninstall script
#952
OrionRandD
opened
3 years ago
0
Wrong pysam version in Gemini 0.30.2 ('module' object has no attribute 'VariantRecord')
#951
jdelafon
opened
3 years ago
1
Error installing
#950
Phillip-a-richmond
opened
3 years ago
0
Documentation v30
#949
Phillip-a-richmond
closed
3 years ago
1
question regarding sqlite Blob
#948
dridk
closed
3 years ago
3
Fix for #946
#947
mmoisse
closed
4 years ago
1
Unexpected results when using OR with comp_hets
#946
mmoisse
closed
4 years ago
4
Error in GEMINI Download
#945
skose82
closed
1 year ago
0
cadd.t01 test fails
#944
mmokrejs
opened
4 years ago
0
effstring.t03 test fails
#943
mmokrejs
opened
4 years ago
1
nogls-sub-bcolz.t14 test fails
#942
mmokrejs
opened
4 years ago
0
nogls.t2 test fails
#941
mmokrejs
opened
4 years ago
0
nogls-sub-bcolz.t43 test fails
#940
mmokrejs
opened
4 years ago
0
cast self.cache.keys() in GeminiRow as list
#939
matthdsm
closed
4 years ago
0
add dict representation to GeminiRow
#938
matthdsm
closed
4 years ago
4
Using gemini API in python3
#937
matthdsm
closed
4 years ago
8
Forked Pgx support branch
#936
sinonkt
closed
4 years ago
0
gnomAD genomes
#935
lbicknell
opened
4 years ago
0
YAMLLoadWarning
#934
oleraj
closed
4 years ago
2
gemini_install.py --gemini-version option not working
#933
gmteunisse
opened
4 years ago
0
KeyError: '1002296'
#932
ghost
closed
4 years ago
0
Exception: gt_bases not implemented for ploidy > 2
#931
gormleymp
opened
4 years ago
1
running setup.py install > RuntimeError: Python version >= 3.5 required
#930
DanielAmsel
closed
5 years ago
5
gene list from `gemini burden` smaller than gene list from `gemini burden --calpha`
#929
mjsduncan
closed
5 years ago
1
TypeError: 'NoneType' object has no attribute '__getitem__
#928
kellogg76
opened
5 years ago
5
Compound Hets issue
#927
Phillip-a-richmond
closed
5 years ago
3
support for additional VEP terms
#926
jxchong
opened
5 years ago
6
Genotype filter using wildcard with gt_alt_freqs > 0.3
#925
OskarSchnappauf
opened
5 years ago
5
Empty line at the end of ped file breaks gemini load command
#924
mvelinder
closed
5 years ago
0
PostgreSQL, what driver/gemini version(s) are compatible?
#923
JHibbard
opened
5 years ago
1
GATK4 compatibility?
#922
SarahBeecroft
closed
5 years ago
6
gemini comp_hets memory issue
#921
8nb24
opened
5 years ago
3
error
#920
handomsu
opened
5 years ago
3
error
#919
bioturing
closed
5 years ago
0
gemini - load chunk error with LSF scheduler
#918
Fazulur
opened
5 years ago
0
Problem during gemini load
#917
CarlosGAH
closed
5 years ago
13
Connecting to PostgreSQL or other databases?
#916
JHibbard
closed
5 years ago
2
bcolz index for segregation
#915
8nb24
opened
5 years ago
5
Fix, update and automate generation of detailed_gene and summary_gene tables #2
#914
pfpjs
opened
5 years ago
1
Fix, update and automate generation of detailed_gene and summary_gene tables
#913
pfpjs
closed
5 years ago
9
release prep
#912
brentp
opened
5 years ago
46
--nonsynonymous option disables --min-aaf/--max-aaf in gemini burden
#911
wm75
opened
5 years ago
0
gemini dump --genotypes no longer working
#910
wm75
opened
5 years ago
0
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