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arq5x
/
gemini
a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
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Issues building database ( KeyError: u'start_retained_variant')
#909
hoppmann
opened
5 years ago
2
Installation issues
#908
afkoeppel
opened
5 years ago
8
gemini error no config found
#907
ghost
opened
5 years ago
0
Could there be a mistake?
#906
mjmiossec
closed
6 years ago
3
Add --gt-filter to built-in rare disease tools under strict assumptions
#905
arq5x
opened
6 years ago
0
sqlite3 8-bit bytestring error while loading vcf into gemini
#904
mbootwalla
opened
6 years ago
5
X-linked recessive model needs to handle het calls in males
#903
jxchong
closed
5 years ago
14
HGNC nomenclature
#902
nswh
opened
6 years ago
2
"bash master-test.sh" bugs
#901
ponomarevsy
closed
5 years ago
1
python3 install
#900
matthdsm
closed
5 years ago
0
sqlalchemy.exc.OperationalError when using gemini amend command to upload new ped file
#899
OskarSchnappauf
opened
6 years ago
2
Expose the get_json() to the gemini scripts
#898
kounkou
opened
6 years ago
1
pip installation
#897
matthdsm
closed
5 years ago
1
Tutorial file issues
#896
sormond
closed
6 years ago
2
Wrongly reported gnomad_num_het
#895
mmoisse
closed
6 years ago
10
VCF GT and FT fields
#894
marivalen
opened
6 years ago
1
Is GRCh38 /b38/ hg38 supported?
#893
gpcr
opened
6 years ago
1
clinvar
#892
jeffverboon
opened
6 years ago
4
Python 3 support?
#891
JHibbard
opened
6 years ago
1
gts.sample1 != gts.sample2 error/quirk
#890
parkesK
opened
6 years ago
6
Minimal installation
#889
matthdsm
closed
6 years ago
2
gemini dont work with several cores
#888
aurelBZH
closed
6 years ago
2
Hyphens in extra VEP columns
#887
oleraj
closed
6 years ago
3
'=' sign in VEP CSQ field results in error
#886
oleraj
opened
6 years ago
3
Transmission of Dominant De Novos
#885
parkesK
closed
5 years ago
13
Recommendations for working with VCF 4.2
#884
stephenwilliams22
closed
6 years ago
8
cool filtering variant gui using gemini
#883
aurelBZH
closed
6 years ago
1
Error when trying to use ped file, or amend it to the DB!
#882
alphahmed18
closed
6 years ago
4
--nosudo not working
#881
Vaidhy-M
closed
6 years ago
2
DP field not being parsed into gemini database for some variants
#880
mbootwalla
closed
6 years ago
2
Update to latest version of inheritance in requirements.txt
#879
oleraj
closed
6 years ago
1
gemini install error
#878
PatrickJReed
closed
6 years ago
0
sqlalchemy.exc.ProgrammingError: (sqlite3.ProgrammingError) You must not use 8-bit bytestrings ...
#877
hoppmann
closed
6 years ago
7
gemini web browser error
#876
jpdna
opened
6 years ago
7
give informative error message when trying to annotate database w/o write permissions
#875
jxchong
closed
6 years ago
1
unrecognized arguments: test.snpeff.vcf.db
#874
idamaumea
closed
6 years ago
2
note on clinvar change
#873
brentp
closed
7 years ago
0
fix unicode errors on load and on gemini annotate
#872
brentp
closed
7 years ago
0
Actionable mutation and dgidb issue
#871
robrollback
opened
7 years ago
2
lof_sieve error
#870
marivalen
opened
7 years ago
0
Which HPRD version is integrated in Gemini?
#869
marivalen
opened
7 years ago
0
gt-filter not working correctly with gt_alt_freqs
#868
fcliquet
opened
7 years ago
1
give informative warning message if running de_novo and any family is only a single proband
#867
jxchong
opened
7 years ago
1
give informative error if database doesn't exist
#866
brentp
opened
7 years ago
0
most severely affected transcript
#865
AlisonCT
closed
7 years ago
4
Gemini Issue WARNING: no affecteds in family 0
#864
rpauly
opened
7 years ago
0
allow showing per-sample gt stuff in genewise
#863
brentp
closed
7 years ago
2
fix genewise again
#862
brentp
closed
7 years ago
0
re-fix genewise
#861
brentp
closed
7 years ago
0
fix bug reported by @jxchong
#860
brentp
closed
7 years ago
0
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