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Slurm is a utility to manage and schedule workloads on a cluster of computers.
Many academic institutions use it for distributing computation.
I was wondering if it would be a good idea to impleme…
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Hi, I hope you are well. I am trying to run _wf snippy_ on a dataset of ~750 samples using slurm. When bactopia gets to the gubbins task, the process gets killed due to exceeding the running time limi…
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For a while `spack` replaces the `mpiexec` & `mpirun` commands with a warning "use `srun` because of performance issues.
https://github.com/spack/spack/pull/10340
One of the comments points out …
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Refs:
* #556
* #659
* #528
After reviewing these issues, we (me and @mfranzon) propose to switch to another way of collecting task (which was already mentioned in the past), namely one wher et…
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**Snakemake version**
8.13
**Describe the bug**
I'm using the `slurm` executor plugin to have Snakemake submit jobs to cluster on my behalf. In addition to this, I'm also using the `fs` plugi…
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Setting `num_workers > 1` as suggested in the tutorial did speed optimization up, but Im looking for more speed up in generating the counterfactual explanations. I tried following the instructions for…
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Hello dear developers,I run this script
`python /root/mace/scripts/run_train.py
--name="MACE_model" \
--train_file="train.xyz" \
--valid_fraction=0.05 \
--test_file="test.xyz" \
…
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## Prework
* [x] Read and agree to the [Contributor Code of Conduct](https://github.com/wlandau/crew.cluster/blob/main/CODE_OF_CONDUCT.md) and [contributing guidelines](https://github.com/ropensci/…
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Hi,
I write a for loop to loop over many random parameter sets, for each parameter set it will produce 20 daughter parameter sets by small value mutation of each parameter, then I will plot the bif…
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Hello all,
I keep having problems with this new v3.x recipe. The network file is not created. There is a txt file in `/etc/sysconfig/network-scripts` saying that now the network configuration files…