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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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This looks like a comprehensive workflow. I'd like to use it to do DE analysis and variant calling for other species, like non-human malaria. What would I need to do to make that happen?
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I notice one major difference between PURPLE version 2 and 3 results is that HLA-C no longer appears as a deletion for most samples. HLA-C is a highly polymorphic gene and has [6779 known alleles reco…
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**1. What were you trying to do?**
Infer expression from _.gamp_ file from `vg mpmap`.
I have a bunch of _.fastq_ file (replicates and different treatments), and I runned them through an array i…
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Hello,
First, apologies for the generic title, I wanted to leave it open-ended as I think I have various questions and maybe more when you've replied the existing ones.
Second, my compliments on…
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**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…
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I think we want to display these comments on allele pages.
First I would like to check. Could I get a list of the comments?
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Hi Jonas A,
I'm trying to install the rpvg software on my centos7 linux server by compiling in C++, but I'm getting a series of errors like the following, which is mainly from libvgio. Is it po…
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1. Ensure that mandatory fields, and a couple others, are populated in the downloadable PHAF file.
a. For many rows, the `Allele name` column is blank. There should be an entry, even if it is "unna…
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Interface for curating genetic interaction.
- [x] ~We would probably like to be able to "qualify" "genetic interaction type" during multi-allele annotation, rather than a separate annotation type.…