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In the output from filter-based annotation using dbnsfp (hg19_dbnsfp35c.txt) - there are 55 columns of information when we split the results by comma. I can't seem to find information on what those 55…
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Hello, thanks for the fantastic tool!
I have been using it for many years, but I am facing a bug I have never encountered.
I am running Neopredpipe for a set of samples, separating them by SNPs an…
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Dear sir,
Thanks for your good job!
I just finish instructing the pipeline. But when I run ISOWN with the test data you provide for us, there is an error.
`annotating input file with ANNOVAR ...
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We have no way to prioritise variants within an analysis node. This would be good to reduce classification work on medical scientists.
ACMG classifications have 5 levels of clinical significance, but…
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Would it be possible to print the strand information in the output? i.e. whether the variant is annotated to + or - strand of a specific gene?
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hi,
The troubleshooting I did yesterday to get annovar working (together with an in-person troubleshoot with Amy last month) made me appreciate the value of understanding failures.
How about hav…
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Hello,
I see that LUMPY is coming from the same lab as GEMINI, so I was wondering if there is a workflow for running annotating and filtering variants called by LUMPY.
Ideally, the pipeline would …
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**Describe the bug**
Hey guys,
The following AR variant was annotated as a frameshift variant, however based on the c.HGVS and p.HGVS it should have been a deletion with a stop-gain molecular con…
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Hi,
When I try to run Intervar, I can't change the prefix (-o variable), it is stuck at a variable used by another user of our system.
We tried to look at config files, etc, couldn't figure it out.
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sztup updated
2 years ago
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Hello, I tried to run your tool but come up with the following error.
Could you help me to solve this problem?
Thank you.
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