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doc-ANNOVAR
Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Need Assistance with ANNOVAR annotate_variation.pl Command
#265
iegab
closed
2 days ago
2
Error in prepare_annovar_user.pl line 481, <FH> line 6173 when update clinvar20241111
#264
lincj1994
opened
1 week ago
2
merge master
#263
wangwpi
closed
4 weeks ago
0
merge master branch
#262
wangwpi
closed
1 month ago
0
update startup guide and add use case
#261
kaichop
closed
1 month ago
0
merge
#260
wangwpi
closed
1 month ago
0
merge new download for GENCODE
#259
wangwpi
closed
1 month ago
0
annovar annotates bacterial genome variation
#258
ChenDepp
opened
1 month ago
3
Error: invalid dbstrand information
#257
yanwuanxin
opened
1 month ago
1
merge change from master branch
#256
wangwpi
closed
1 month ago
0
how can I download /humandb/hg19_ALL.sites.2014_10.txt file througth ANNOVAR
#255
nanu4github
opened
2 months ago
1
Please updata prepare_annovar_user.pl for clinvar_20240902.vcf.gz
#254
xiucz
opened
2 months ago
13
one locus match two different transcripts of the same gene
#253
yanwuanxin
opened
2 months ago
3
the base of AAChange.refGene is inconsistent with Ref/Alt
#252
yanwuanxin
opened
2 months ago
2
Missing allele frequencies were annotated when using 1000g2015eas
#251
fanwayne
closed
2 months ago
8
Error for annotating chromosome and bp by rsID
#250
ruuhsu
opened
3 months ago
1
base substitution I input is inconsistent with the calling result
#249
usernamenickname10
opened
3 months ago
0
strand error assignment
#248
asilvestris84
opened
4 months ago
1
index the dbfile by python
#247
pickpingk
closed
5 months ago
0
Update gnomAD database to v4.1 in ANNOVAR (some issues in v4.0)
#246
zouaghiyassine
opened
6 months ago
0
prefix.exonic_variant_function is empty
#245
yanwuanxin
opened
6 months ago
1
Any plan to add All of US population frequency data as annotation source
#244
tushardave26
opened
6 months ago
3
Dbnsfp33 running time
#243
tahirasma
opened
7 months ago
3
Truncated VCF output at chr21
#242
snakesch
closed
7 months ago
2
Download hg38 Gnomad DB
#241
tahirasma
opened
8 months ago
1
prepare_annovar_user.pl not working with COSMIC version 99
#240
ValerieCrolley
closed
8 months ago
2
Annotation of double base substitutions (DBS,DNP)
#239
andreyurch
opened
9 months ago
5
multianno.txt to multianno.vcf
#238
parkjooyoung99
opened
10 months ago
1
Downloading annotation database ....Failed
#237
Acetyl-ZHOU
opened
10 months ago
4
Database Downloads Failing
#236
AnthonyShea1
opened
11 months ago
1
Index file for gnomad database from gnomad website
#235
ShreyGit952
opened
12 months ago
0
zygosity column
#234
fionaelisa
opened
1 year ago
0
annotate.variation.pl showing error
#233
VISHUGUPTA-2712
opened
1 year ago
0
revel format ?
#232
gaom001
closed
1 year ago
7
Annovar not responding
#231
nahd7d
opened
1 year ago
0
wannovar.wglab.org down?
#230
nahd7d
opened
1 year ago
1
wAnnovar down?
#229
fgomez02
opened
1 year ago
2
Indels are removing as invalid input
#228
akhilpampana
opened
1 year ago
3
Cannot able to download annotations from annovar
#227
akhilpampana
closed
1 year ago
4
Error: the required database file annovar/AT_refGeneMrna.txt/hg18_refGene.txt does not exist.
#226
tbestone
opened
1 year ago
3
I found some bugs in the refGene.txt
#225
yang050036
opened
1 year ago
2
Multiple errors for hg38?
#224
noranekonobokkusu
closed
1 year ago
2
Invalid record
#223
syuxuan
closed
1 year ago
3
annovar refLink download failed
#222
dhlee3342
closed
1 year ago
2
annovar server down?
#221
markdunning
opened
1 year ago
4
Error when running table_annovar.pl
#220
yuweisong-uab
opened
1 year ago
0
Access to previous versions of ANNOVAR
#219
senbaikang
closed
1 year ago
5
Which version of 1000G database is used for wANNOVAR?
#218
biofisherman
closed
1 year ago
5
stopgain annotation confused
#217
jiangldu
opened
1 year ago
1
Error: invalid record found in exonic_variant_function file (exonic format error)
#216
AnujaM1611
opened
1 year ago
3
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