WGLab doc-ANNOVAR issues

WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software

http://annovar.openbioinformatics.org

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issues

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index the dbfile by python

#247 pickpingk closed 3 weeks ago
0
Update gnomAD database to v4.1 in ANNOVAR (some issues in v4.0)

#246 zouaghiyassine opened 1 month ago
0
prefix.exonic_variant_function is empty

#245 yanwuanxin opened 1 month ago
1
Any plan to add All of US population frequency data as annotation source

#244 tushardave26 opened 1 month ago
3
Dbnsfp33 running time

#243 tahirasma opened 2 months ago
3
Truncated VCF output at chr21

#242 snakesch closed 2 months ago
2
Download hg38 Gnomad DB

#241 tahirasma opened 3 months ago
1
prepare_annovar_user.pl not working with COSMIC version 99

#240 ValerieCrolley closed 3 months ago
2
Annotation of double base substitutions (DBS,DNP)

#239 andreyurch opened 4 months ago
5
multianno.txt to multianno.vcf

#238 parkjooyoung99 opened 5 months ago
1
Downloading annotation database ....Failed

#237 Acetyl-ZHOU opened 5 months ago
4
Database Downloads Failing

#236 AnthonyShea1 opened 6 months ago
1
Index file for gnomad database from gnomad website

#235 ShreyGit952 opened 7 months ago
0
zygosity column

#234 fionaelisa opened 8 months ago
0
annotate.variation.pl showing error

#233 VISHUGUPTA-2712 opened 8 months ago
0
revel format ?

#232 gaom001 closed 8 months ago
7
Annovar not responding

#231 nahd7d opened 8 months ago
0
wannovar.wglab.org down?

#230 nahd7d opened 8 months ago
1
wAnnovar down?

#229 fgomez02 opened 8 months ago
2
Indels are removing as invalid input

#228 akhilpampana opened 9 months ago
3
Cannot able to download annotations from annovar

#227 akhilpampana closed 9 months ago
4
Error: the required database file annovar/AT_refGeneMrna.txt/hg18_refGene.txt does not exist.

#226 tbestone opened 11 months ago
3
I found some bugs in the refGene.txt

#225 yang050036 opened 11 months ago
2
Multiple errors for hg38?

#224 noranekonobokkusu closed 1 year ago
2
Invalid record

#223 syuxuan closed 1 year ago
3
annovar refLink download failed

#222 dhlee3342 closed 1 year ago
2
annovar server down?

#221 markdunning opened 1 year ago
4
Error when running table_annovar.pl

#220 yuweisong-uab opened 1 year ago
0
Access to previous versions of ANNOVAR

#219 senbaikang closed 1 year ago
5
Which version of 1000G database is used for wANNOVAR?

#218 biofisherman closed 1 year ago
5
stopgain annotation confused

#217 jiangldu opened 1 year ago
1
Error: invalid record found in exonic_variant_function file (exonic format error)

#216 AnujaM1611 opened 1 year ago
0
Error running system commands

#215 surakshavinod closed 1 year ago
5
how to get the transcription start site?

#214 caiji-lh closed 1 year ago
1
error

#213 Ramita2320 opened 1 year ago
1
Db Download Error

#212 faramarzgsm opened 1 year ago
3
frameshift insertion HGVS different protein position between Annovar and VEP

#211 RysBen opened 1 year ago
2
Downloads for ensGene, ensGene40 for hg38 no longer work

#210 slagelwa closed 1 year ago
1
About HGVS 'NM_172351.3:exon13:c.1176-16A>G'

#209 haiwufan opened 1 year ago
0
Annotation values equal to "0" converted as missing in the output when using table_annovar.pl

#208 teone182 opened 1 year ago
1
Annotation of exon-intron junction variant

#207 Bin-Guan closed 1 year ago
2
Argument "T" isn't numeric in **exac03** file

#206 xiucz opened 1 year ago
2
About SVs annotation by using annovar

#205 yshcai opened 1 year ago
0
Installing as module on HPC

#204 amy-houseman opened 1 year ago
1
Error when using table_annovar.pl

#203 edmondwonkam opened 1 year ago
0
IMPACT categories HIGH, MODERATE, LOW, MODIFIER - VEP vs snpEff vs ANNOVAR

#202 robertzeibich opened 1 year ago
2
rmsk annotation source cant be downloaded

#201 yangyxt opened 1 year ago
2
About: Error running system command: <coding_change.pl

#200 ClarenceHsiang opened 1 year ago
0
A problem in using hg19_snp138.txt

#199 SYSUMSD opened 1 year ago
2
INDEL, CNV and structural variation in ANNOVAR

#198 Shicheng-Guo opened 1 year ago
0