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### Description of feature
Let's say I call `multiqc ... -m bcl2fastq -m interop -m fastp`
If no log file for the interop module are found, then it will be silently ignored and a report will be gene…
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### Description of feature
MultiQC report generated with the bclconvert module doesn't include the Undetermined section.
I am attaching screenshots : one report generated with the bcl convert module…
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### Description of bug
I am currently testing the latest version of Multiqc before a version bump to our production pipelines. Our current version (1.14) works with our integration tests, however, t…
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As needed by @QJohn2017 a setup script for tianhe2 is needed (see #89). Since tianhe2 uses SLURM for scheduling, either the `./prepare_job` script needs to be adjusted to an `./prepare_job_tianhe2.sh`…
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**Description of bug:**
I have been struggeling with getting MultiQC to run on fastp output.
My workdir contains 4 files:
- `fastp_bad_MiSeq_data.html`
- `fastp_bad_MiSeq_data.json`
- `fastp_good…
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The processing QC report for ICELL scATAC-seq data seems to erroneously include the sample(s) from the samplesheet, in addition to the samples from the well list file in the report.
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We can use [this run](https://basespace.illumina.com/s/5yuCT6UE1e3Q) to test the BCL portion of the code. Note, we'll need to add remove all files BCL files except for 0001* to 0169* (if we want to pr…
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Currently, `cellranger count` uses `--id` for both output directory and as a prefix for some files (and possibly other things?)
so when running cellranger count --id=myid, I will get:
```
/curren…
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Hi,
I'm running the Cumulus Smart-Seq2 workflow on Terra and am getting this error after the alignment is all done:
/cromwell_root/script: line 33: strato: command not found
Does that mean th…
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Working on a data release ticket and got a "list index out of range" error, and the files are not linked:
`$ dare link -w bcl2fastq -s fastqs -l samples.txt -pr GBMDAS
Extracted files from File Pro…