-
Hi,
I have a question for this example [vireoSNP_clones](https://nbviewer.org/github/single-cell-genetics/vireo/blob/master/examples/vireoSNP_clones.ipynb)
I am able to generate the final figure…
-
Hi, I was wondering if I could use Libra (specifically with setting: de_family = "pseudobulk", de_method = "limma", de_type = "voom") with a scRNA-seq dataset (Seurat) in which I have let's say:
- Tw…
-
Dear BLAZE developers,
I was wondering if the BLAZE pipeline can be used with a different single-cell protocol than 10X.
If our single-cell protocol has a different Adapter sequence, and we have …
-
Hello,
Thanks again for creating this nice package! I want to let you know that It has been instrumental to build up a paper that will be soon published in Nature Communications (and your software …
-
Hello Chromap Team,
Thank you very much for actively maintaining the chromap!
I recently used Chromap for mapping scATAC-seq data with a barcode whitelist. I found that the log file is a bit co…
-
The 10x Fixed RNA Profiling kit has some benefits with respect to the standard kit. For example, cells can be stored before library prep, there is a gene targeting mechanism based on specific targete…
rob-p updated
2 months ago
-
Dear Velocyto Team,
Our lab used a modified Smart-seq2 protocol to allow for multiplexed single-cell RNA-seq. Primers of RT reaction were designed with cell-specific barcodes and unique molecular ide…
-
### Checklist
- [X] I can reproduce the bug with the latest version given [here](https://github.com/FossifyOrg/Contacts/releases/latest).
- [X] I made sure that there are **no existing issues** - [op…
N1N74 updated
3 months ago
-
Hi,
I'm currently working with a dataset from Yuan et al. 2018 (GSE103224). They did something similar to Drop-seq, but using Illumina Nextera-XT. They state in their paper that read1 contains cell…
-
Hi,
Thank you for developing this tool. I would like to use it to estimate mutational burdens at both the cell-type and single-cell levels. While there is some discussion regarding mutational burde…