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Keywords: Disease Ecology, Markov Chain Monte Carlo (MCMC), Partially Observed Markov Processes (POMP), Non-negative Binomial Distribution, Forecasting, West Nile Virus (WNV).
Developing models to …
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Hi,
My relative abundance table reads like this:
genus | control-1 | control-2 | case-1 | case-2 |
--- | --- | --- | --- | --- |
Colwellia | 0.51 | 0.35 | 43.3 | 56.4 |
Pseudoalteromonas …
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We noticed recently that doing quantification multiple times (using exact same settings) on the same file using salmon v0.99.0 resulted in some transcripts having different read number values (NumRead…
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Guild-Level Microbiome Signature Associated with COVID-19 Severity and Prognosis -- Guo M et al. -- mBio
https://journals.asm.org/doi/10.1128/mbio.03519-22
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I have run decontam on a data set that has ASV’s for tumor tissue, negative controls, and control tissue. The negative controls did not have any tissue but only reagent. The controls are non-tumor spe…
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Hi dear,
Could you please explain to me what is the APA columns in the differential expression file and the decision file?
I checked the coordinates reported in those column using ensembl ad they …
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Hello,
Is there a way to add a title to my erorrbar and heatmap please ?
p % column_to_rownames("pathway"),
daa_results_df = metacyc_daa_annotated_results_df,
Group = meta…
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Alterations of the gut microbiome in HIV infection highlight human anelloviruses as potential predictors of immune recovery – Celia Boukadida – Microbiome
https://microbiomejournal.biomedcentral.com/…
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Hello!
Thanks a lot for making this tool available. I ran the demo and analyzed the sample dataset with no issues but when testing charcoal on my own dataset I am running into errors which seem to…
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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…