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merenlab
/
anvio
An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[BUG] anvi-summarize doesn't report all KOfam annotations when there are multiple for the same gene call
#2375
ivagljiva
opened
2 days ago
2
Update Python style with pep8 formatting
#2374
metehaansever
closed
1 week ago
0
[BUG] The number of splits in a bin containing all splits does not equal the number of items from the interactive interface
#2373
mschecht
opened
1 week ago
2
[BUG] anvi-setup-kegg-data encountered an error
#2372
Zerong0513
opened
1 week ago
1
Secondary alignment tracking for anvi-profile
#2371
meren
opened
1 week ago
0
[BUG] manual curation import binning to profile.db not working
#2370
emily-ap
closed
1 week ago
5
[FEATURE REQUEST] Profiling of secondary mapping and read with no sequence in bam files
#2369
FlorianTrigodet
opened
2 weeks ago
17
[FEATURE REQUEST] Simplify the anvi'o conda installation command
#2368
ahenoch
opened
2 weeks ago
4
[BUG] Colors in the legend not matching the figure
#2367
FlorianTrigodet
opened
3 weeks ago
2
Better calculation of mean coverage Q2Q3
#2366
meren
closed
3 weeks ago
1
[BUG] `anvio-summarize` : `popper.min.js` is missing.
#2365
Louis-MG
closed
2 weeks ago
10
Foldseek driver + Structure base Pangenome
#2364
metehaansever
opened
3 weeks ago
12
KeyError: 'modelseed_reaction_id'
#2363
ranjanmanishblue
closed
3 weeks ago
3
anvi-export-splits-taxonomy now export a table with all taxonomic levels
#2362
FlorianTrigodet
closed
3 weeks ago
1
Alphafold search inspection
#2361
metehaansever
closed
1 month ago
0
[BUG] KeyError: 'pop from an empty set'
#2360
Louis-MG
closed
1 month ago
1
[BUG] Anvio-8 installation
#2359
DMarques99
opened
1 month ago
1
[BUG] anvi-setup-scg-taxonomy not working - v8
#2358
FlorianTrigodet
closed
1 month ago
1
Pangraph 0.3.0
#2357
ahenoch
opened
1 month ago
1
Bump marked from 0.3.6 to 4.0.10 in /anvio/data/interactive
#2356
dependabot[bot]
closed
1 month ago
1
Bump bootstrap from 4.6.0 to 5.0.0 in /anvio/data/interactive
#2355
dependabot[bot]
opened
1 month ago
0
Bump jquery-ui from 1.12.1 to 1.13.2 in /anvio/data/interactive
#2354
dependabot[bot]
opened
1 month ago
0
Bump jquery from 1.12.4 to 3.5.0 in /anvio/data/interactive
#2353
dependabot[bot]
opened
1 month ago
0
[BUG] Error in rule megahit
#2352
PeymanDerik
closed
1 month ago
8
Categorize output files
#2351
semiller10
closed
1 month ago
0
Draw KEGG pathway maps with group data
#2350
semiller10
closed
1 month ago
1
Lib to npm
#2349
metehaansever
closed
1 month ago
0
anvi-draw-kegg-pathways: command not found
#2348
marlaux
closed
1 month ago
4
[BUG] Python version is incompatible with Anvi'o
#2347
okcoskun
closed
2 months ago
3
[BUG] Error in anvi-setup-ncbi-cogs: makeblastdb
#2346
PeymanDerik
closed
2 months ago
5
[BUG] Insert a short but descriptive title (leave the '[BUG]' part)
#2345
PeymanDerik
closed
2 months ago
1
[BUG] `anvi-run-hmms` does not accurately detect 5S rRNA
#2344
philipwoods
opened
2 months ago
3
[BUG] `anvi-script-gen-function-matrix-across-genomes` does not know option `--skip-checking-genome-hashes`
#2343
Louis-MG
closed
1 month ago
7
[BUG] `anvi-dereplicate-genomes` does not accept float in `--min-fraction`
#2342
u-xixi
opened
2 months ago
0
Mapping multiple orthologs graphics types
#2341
semiller10
closed
2 months ago
0
Adding binning step to workflow
#2340
UniAlberta
closed
2 months ago
1
[BUG] Error when writing output files with anvi-dereplicate-genomes and pyANI
#2339
uguyet
closed
1 month ago
4
Anvi'o workflow ends prematurely
#2338
UniAlberta
closed
2 months ago
12
[FEATURE REQUEST] Genome redundancy estimations compatible with introns
#2337
tdelmont
opened
2 months ago
8
Fix use of stray_ko_dict when including stray KOs in anvi-estimate-metabolism
#2336
bcoltman
closed
2 months ago
4
phylogenetic tree build fails
#2335
jsalas0798
closed
2 months ago
2
KEGG maps and reaction network
#2334
semiller10
closed
2 months ago
4
Running anvio through snakemake, no errors but the job submission stops running
#2333
UniAlberta
closed
3 months ago
12
Advanced defline formatting
#2332
meren
closed
1 month ago
0
[BUG] anvi-pan-genome - diamond BUG
#2331
pcampiteli
opened
3 months ago
0
[BUG] cannot import vbgmm in concoct
#2330
NebulaSL
closed
2 months ago
2
[FEATURE REQUEST] adding contigs database names to deflines of exported genes/proteins fasta
#2329
dspeth
closed
1 month ago
3
export locus small updates
#2328
mschecht
closed
3 months ago
1
Inspect gc acc table
#2327
metehaansever
closed
3 months ago
2
docs: add detailed docstrings to DBInfo methods and classes
#2326
bernhardkaindl
closed
3 months ago
1
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