merenlab anvio issues - Githubissues

merenlab / anvio

An analysis and visualization platform for 'omics data

http://merenlab.org/software/anvio

GNU General Public License v3.0

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issues

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[BUG] pulp v2.8 made API changes that cause errors generating workflow DAG diagrams

#2290 smdabdoub opened 4 days ago
0
[BUG] Different results when running samples together vs separate

#2289 lexikazen closed 7 hours ago
3
[BUG] anvi-split need `variability_splits` in profile.db

#2288 soojunglee98 opened 4 days ago
1
[FEATURE REQUEST] Using a list of gene callers id with anvi-export-functions

#2287 FlorianTrigodet closed 6 days ago
0
[FEATURE REQUEST] MD5 checksum verification for sra-download workflow

#2286 raissameyer opened 1 week ago
0
Anvio installation

#2285 UniAlberta closed 1 week ago
1
[BUG] Installing Anvio-8 - error failed building wheel for anvio

#2284 rpeguil closed 2 weeks ago
5
Bump scikit-learn from 1.2.2 to 1.5.0

#2283 dependabot[bot] opened 2 weeks ago
0
A solution for prodigal segmentation fault errors

#2282 meren closed 2 weeks ago
0
Anvi_analyze_synteny ouput visualization

#2281 Qvdauwer closed 1 week ago
1
[BUG] is get_enriched_groups(props, reps) working as intended?

#2280 kafker opened 2 weeks ago
4
[FEATURE REQUEST] Color scale(s) in the SVG output

#2279 FlorianTrigodet opened 3 weeks ago
1
Tree scale bar on Sidebar

#2278 metehaansever opened 4 weeks ago
3
Config Error: PyANI returned with non-zero exit code, there may be some errors. please check the log file for details.

#2277 Naim4382 closed 3 weeks ago
1
add GenBank file check for identical locus names

#2276 treitlis closed 4 weeks ago
1
Pangenome analysis when dispaly result, can't see the Phylogenetic tree

#2275 GZL217 closed 1 month ago
13
[BUG] Stop codons appear when anvi-inspect magnification truncates and ORF

#2274 mschecht opened 1 month ago
3
[BUG] KeyError: None in anvi-script-gen-distribution-of-genes-in-a-bin

#2273 Mayurk619 closed 1 month ago
3
Trouble installing anvi'o 8 on Apple M1 Pro

#2272 lexikazen opened 1 month ago
0
Newick rerooting

#2271 metehaansever closed 1 month ago
1
[BUG] created profile does not include a table named `mean_coverage_Q2Q3_splits`

#2270 NebulaSL closed 1 month ago
5
Update DEVELOPERS.yaml

#2269 AstrobioMike closed 1 month ago
1
[FEATURE REQUEST] metabolic enrichment for enzymes

#2268 wsmets closed 1 month ago
2
Add @treitlis as contributor

#2267 ivagljiva closed 1 month ago
7
Please help concoct clustering

#2266 kinosham closed 1 month ago
4
[BUG] renaming profiles with anvi-db-info only does a partial job

#2265 xvazquezc opened 1 month ago
1
Anvio profiling assistance

#2264 kinosham closed 1 month ago
1
ci: bump github actions versions

#2263 afuetterer closed 1 month ago
1
Export locus hmm hits

#2262 mschecht closed 2 months ago
1
[BUG] anvi-run-hmms but sqlite3.OperationalError: unable to open database file

#2261 AlenaYoung closed 2 months ago
0
Interactive interface, TypeError: undefined is not an object (evaluating 'this.layerdata_dict[q.label][layer.index]')

#2260 magalilescotn closed 1 month ago
4
[DISCUSSION] Clarifying bitscore heuristic and KO profile check in anvi-run-kegg-kofams

#2259 jma1991 closed 1 month ago
2
where I can intuitively find the number of core genes and unique genes

#2258 GZL217 closed 2 months ago
1
[BUG] Anvi'o-7 anvi-compute-functional-enrichment do not have an option to choose gene caller

#2257 TomKLHui closed 2 months ago
2
[BUG] anvi-run-kegg-kofams terminated prematurely

#2256 lulux719 opened 2 months ago
1
Config Error: There is nothing at '/mnt/d/bioinformatics/phlogytree/M_ZM43__SPLIT/ZM43_CLEAN/CONTIGS.db' :/

#2255 GZL217 opened 2 months ago
2
Config Error: There is nothing at '/mnt/d/bioinformatics/phlogytree/M_ZM43__SPLIT/ZM43_CLEAN/CONTIGS.db' :/

#2254 GZL217 closed 2 months ago
1
Fix sample-layer-order check

#2253 metehaansever closed 2 months ago
0
[BUG] The interactive interface does not care about layer orders stored in the state

#2252 meren closed 2 months ago
1
[BUG] anvi-interactive is not working in my computer

#2251 soojunglee98 closed 2 months ago
2
anvi-display-functions, KOfam, sugar

#2250 Lcornet opened 2 months ago
1
Allow external genomes input to anvi-estimate-scg-taxonomy

#2249 ivagljiva closed 2 months ago
6
[FEATURE REQUEST] Interface option to keep contigs together when binning

#2248 Ge0rges opened 3 months ago
2
[BUG] anvi-setup-ncbi-cogs urlopen error

#2247 Lcornet closed 3 months ago
6
UI bug fix

#2246 metehaansever closed 3 months ago
2
[BUG] Parent layer bug

#2245 FlorianTrigodet closed 3 months ago
1
Script to generate HMM directory from HMM file. Add Defense Finder Models HMM.

#2244 Ge0rges closed 3 months ago
8
[BUG] Config Error: Drivers::Muscle: anvio-8

#2243 Alesita0381 closed 3 months ago
7
Fix metagenome mode with collection focus

#2242 ivagljiva closed 3 months ago
1
Updating DEVELOPERS.yaml file

#2241 Vlasovets closed 3 months ago
3