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merenlab
/
anvio
An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[BUG] Config Error: Drivers::Muscle: anvio-8
#2243
Alesita0381
closed
3 months ago
7
Fix metagenome mode with collection focus
#2242
ivagljiva
closed
3 months ago
1
Updating DEVELOPERS.yaml file
#2241
Vlasovets
closed
3 months ago
3
2206 bug nucleotide
#2240
metehaansever
closed
3 months ago
0
[Bug] external-genomes.txt missing genomes
#2239
Alesita0381
closed
3 months ago
8
[BUG] Key Error when running anvi-metabolism
#2238
lexikazen
closed
3 months ago
7
Enabling annotation of KEGG Orthologs without bit score thresholds ('stray KOs')
#2237
ivagljiva
closed
3 months ago
4
Update h5py installation error message
#2236
Vlasovets
closed
3 months ago
2
A fix for estimating number of genomes using single-copy core gene hits
#2235
ivagljiva
closed
4 months ago
0
[BUG] Eggnog mapper not running in workflow, works fine manually in same conda env
#2234
timternetnet
opened
4 months ago
1
UI pangraph into pangraph-merge branch
#2233
metehaansever
closed
4 months ago
0
Pangraph
#2232
ahenoch
closed
4 months ago
0
[BUG] 'NumGenomesEstimator' sometimes double-counts some genomes as both Bacteria and Archaea
#2231
ivagljiva
closed
4 months ago
8
[DISCUSSION] Common misconceptions and mistakes for anvi'o beginners that we should clarify in a blog post
#2230
ivagljiva
opened
4 months ago
5
anvi-estimate-metabolism --metagenome-mode memory fix
#2229
ivagljiva
closed
4 months ago
0
[BUG] Memory issues with `anvi-estimate-metabolism` on large metagenomes in `--metagenome-mode`
#2228
ivagljiva
closed
4 months ago
4
[BUG] anvi-pan-genome DIAMOND expected output files are missing
#2227
carloshenriquezc
closed
4 months ago
0
V22 to v23 migration
#2226
mschecht
closed
4 months ago
0
[BUG] anvi-estimate-scg-taxonomy crashes when external-genomes file contains contigs-db with old scg names
#2225
mschecht
closed
4 months ago
8
Newick rooting with branch support value
#2224
FlorianTrigodet
closed
3 months ago
7
Adding Contributor
#2223
Kekananen
closed
4 months ago
1
Convert photo to 900 x 900 px
#2222
Kekananen
closed
4 months ago
1
Contribution kananen
#2221
Kekananen
closed
4 months ago
2
Newick rerooting
#2220
metehaansever
closed
4 months ago
0
external gene call file created from more than two contigs
#2219
smta11
closed
4 months ago
5
Fix bug in stepwise copy number calculation for issue #2217
#2218
ivagljiva
closed
4 months ago
1
[BUG] Incorrect (inflated) stepwise copy number for modules with complex parenthetical clauses
#2217
ivagljiva
closed
4 months ago
1
[BUG] anvi-dereplicate-genomes python? error
#2216
natalia-rodilla
closed
4 months ago
1
[BUG] Failed building wheel for datrie
#2215
hmamine
closed
4 months ago
6
anvio thinks the python version is different than the one installed
#2214
Naturalist1986
closed
5 months ago
3
[TECHNICAL ISSUE] No SNVs when using anvi-inspect
#2213
FlorianTrigodet
opened
5 months ago
1
Pangraph
#2212
metehaansever
closed
5 months ago
0
[REPORT] Updating anvi'o SCG taxonomy databases with new genes
#2211
meren
opened
5 months ago
1
Updating the databases for anvi'o SCG taxonomy
#2210
meren
closed
4 months ago
7
Interactive blog update
#2209
metehaansever
closed
5 months ago
0
Interactive blog update
#2208
metehaansever
closed
5 months ago
0
Use regular files rather than STDIN for alignment tasks for phylogenomics
#2207
meren
closed
5 months ago
0
[BUG] Nucleotide and amino acid not aligned in the inspect page
#2206
FlorianTrigodet
closed
3 months ago
3
[BUG] tarfile.ReadError: not a gzip file
#2205
Bill-Branson
opened
5 months ago
3
[BUG] anvi-merge error (can I put multiple contigs.db in the code?)
#2204
soojunglee98
closed
5 months ago
1
anvio-8:mamba installation doesn’t work in the anaconda environment
#2203
haihao999
closed
5 months ago
1
Skip checking genome hashes not working
#2202
lexikazen
opened
5 months ago
1
Filter HMM hits based on length
#2201
meren
closed
5 months ago
0
[BUG] `anvi-get-sequences-for-hmm-hits` alignment silently fails
#2200
Ge0rges
closed
4 months ago
20
merge master into ui-improvements
#2199
metehaansever
closed
5 months ago
0
Inversions activity issue
#2198
FlorianTrigodet
closed
5 months ago
1
Show user genomes with missing hmm-source
#2197
mschecht
closed
6 months ago
1
[BUG] anvi-split does not split item additional metadata
#2196
mschecht
closed
6 months ago
1
[BUG] Potential computation in `anvi-get-pn-ps-ratio` is incorrect
#2195
apcamargo
opened
6 months ago
2
Fix protein structure problem
#2194
metehaansever
closed
6 months ago
2
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