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merenlab
/
anvio
An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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Structure fix
#2193
metehaansever
closed
6 months ago
2
Reaction network updates
#2192
semiller10
closed
6 months ago
1
chore: fix typos
#2191
afuetterer
closed
6 months ago
4
[BUG] ValueError occurred after running anvi-reaction-network
#2190
yqy6611
opened
6 months ago
3
[BUG] KeyError occured after running anvi-estimate-metabolism
#2189
yqy6611
closed
6 months ago
8
Update anvi-script-filter-hmm-hits-table parameters
#2188
mschecht
closed
6 months ago
0
Update sra_download
#2187
mschecht
closed
6 months ago
0
Report gene and model coverage from hmmsearch
#2186
mschecht
opened
6 months ago
1
[BUG] no reads passing iu-filter-quality-minoche
#2185
pedres
closed
6 months ago
3
[DISCUSSION] UI Improvements
#2184
meren
opened
7 months ago
42
UI improvements
#2183
metehaansever
closed
7 months ago
0
Ncbi-genome-download
#2182
manik-123
opened
7 months ago
0
[FEATURE REQUEST] Preserve prodigal metadata for `anvi-export-gene-calls`
#2181
Ge0rges
opened
7 months ago
7
[BUG] Anvio should clear the tmp directory when done, and respect $TMPDIR
#2180
Ge0rges
closed
7 months ago
2
UI improvements
#2179
metehaansever
closed
5 months ago
8
No "load bin collection" button
#2178
magueos
closed
7 months ago
1
Metabolism estimation for gene cluster bins in a pangenome
#2177
ivagljiva
closed
7 months ago
4
Fix overinflated stepwise copy number values from multiple annotations on same gene
#2176
ivagljiva
closed
7 months ago
0
Fix `anvi-script-reformat-fasta` amino acid check
#2175
Ge0rges
closed
7 months ago
4
Allow pre-computed inversions to be searched in new metagenomes without profile-db and bam-file artifacts
#2174
meren
closed
7 months ago
0
[BUG] Genes with multiple annotations overinflate stepwise pathway copy number values
#2173
ivagljiva
closed
7 months ago
5
anvi-setup-scg-taxonomy and anvi-setup-ncbi-cogs error
#2172
magueos
closed
7 months ago
2
Verbose output for missing genomes in anvi-get-sequences-for-hmm-hits output
#2171
meren
closed
8 months ago
0
[BUG] anvi-get-sequences-for-hmm-hits in combination with --gene-names silently removes genomes
#2170
dspeth
closed
8 months ago
7
Minor docs update
#2169
meren
closed
8 months ago
0
anvi-script-reformat-bam updates
#2168
meren
closed
8 months ago
1
[BUG] anvi-interactive crashes when using a collection and a external tree
#2167
pedres
closed
8 months ago
8
Problems about Structure Display with anvi-display-structure
#2166
YongyiPeng
opened
8 months ago
7
Reformat BAM files created prior to `anvi-script-reformat-fasta`
#2165
telatin
closed
8 months ago
7
[FEATURE REQUEST] A command to make new HMM sources from a list of COG IDs.
#2164
Ge0rges
closed
3 months ago
12
Performing `anvi-self-test` but the interactive operator did not load in Chrome
#2163
LRH1995
closed
8 months ago
1
Updated docs for anvi-run-ncbi-cogs
#2162
Ge0rges
closed
8 months ago
0
[BUG] Issue with --pre-computed-inversions
#2161
FlorianTrigodet
closed
7 months ago
2
DAStool finishes without errors but output not recgnized by Anvi'o
#2160
eneas01
closed
8 months ago
3
[BUG] Insert a short but descriptive title (leave the '[BUG]' part)
#2159
eneas01
closed
8 months ago
1
[FEATURE REQUEST] Outputs for function- and pathway-level variability analysis
#2158
ivagljiva
opened
8 months ago
2
Reaction network updates
#2157
semiller10
closed
8 months ago
0
[BUG] anvi-get metabolic-model-file ImportError: Numba needs NumPy 1.25 or less
#2156
Mild-High
closed
8 months ago
2
Added support for AA files for anvi-run-ncbi-cogs
#2155
Ge0rges
closed
8 months ago
10
[BUG] anvio-cluster-contigs fails with CONCOCT
#2154
Ge0rges
closed
3 months ago
17
[BUG] Search with operators in the interactive interface
#2153
FlorianTrigodet
opened
8 months ago
5
[DISCUSSION] Methylation processing in anvio
#2152
Ge0rges
opened
8 months ago
2
Reaction network updates
#2151
semiller10
closed
8 months ago
0
[BUG] anvi-script-augustus-output-to-external-gene-calls 0 gens parsed
#2150
mloberme
opened
8 months ago
0
Update Dockerfile
#2149
metehaansever
closed
8 months ago
1
[BUG] Most annotations from anvi-run-cazymes have undefined ('-') accession numbers
#2148
ivagljiva
opened
8 months ago
5
Update anvi-help
#2147
metehaansever
closed
9 months ago
1
[BUG] anvi-help not working anymore
#2146
FlorianTrigodet
closed
9 months ago
1
anvio 7.1: anvi-setup-ncbi-cogs --reset
#2145
17863952296
closed
9 months ago
1
Reaction network updates
#2144
semiller10
closed
9 months ago
0
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