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merenlab
/
anvio
An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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[FEATURE REQUEST] Outputs for function- and pathway-level variability analysis
#2158
ivagljiva
opened
8 months ago
2
Reaction network updates
#2157
semiller10
closed
8 months ago
0
[BUG] anvi-get metabolic-model-file ImportError: Numba needs NumPy 1.25 or less
#2156
Mild-High
closed
8 months ago
2
Added support for AA files for anvi-run-ncbi-cogs
#2155
Ge0rges
closed
8 months ago
10
[BUG] anvio-cluster-contigs fails with CONCOCT
#2154
Ge0rges
closed
4 months ago
17
[BUG] Search with operators in the interactive interface
#2153
FlorianTrigodet
opened
8 months ago
5
[DISCUSSION] Methylation processing in anvio
#2152
Ge0rges
opened
8 months ago
2
Reaction network updates
#2151
semiller10
closed
9 months ago
0
[BUG] anvi-script-augustus-output-to-external-gene-calls 0 gens parsed
#2150
mloberme
opened
9 months ago
0
Update Dockerfile
#2149
metehaansever
closed
9 months ago
1
[BUG] Most annotations from anvi-run-cazymes have undefined ('-') accession numbers
#2148
ivagljiva
opened
9 months ago
5
Update anvi-help
#2147
metehaansever
closed
9 months ago
1
[BUG] anvi-help not working anymore
#2146
FlorianTrigodet
closed
9 months ago
1
anvio 7.1: anvi-setup-ncbi-cogs --reset
#2145
17863952296
closed
9 months ago
1
Reaction network updates
#2144
semiller10
closed
9 months ago
0
Reaction network updates
#2143
semiller10
closed
9 months ago
0
Error running `anvi-reaction-network`
#2142
IsabelFE
opened
9 months ago
22
[BUG] Anvio v8 install python version errors - snakemake, fastani
#2141
zscooper
closed
9 months ago
6
Process stops midway and does not create the PROFILES.db on Anvio
#2140
Azimdine
closed
9 months ago
2
Failed to setup CAZymes with `anvi-setup-cazymes`
#2139
IsabelFE
closed
9 months ago
3
Inversion motif summary
#2138
FlorianTrigodet
closed
9 months ago
1
[BUG] Error in setting up kegg database in new anvio (Marie)
#2137
Harpreet525
closed
9 months ago
11
Adding the arCOG14 database to our COGs infrastructure
#2136
ivagljiva
closed
9 months ago
6
[DISCUSSION] Structure pangenomes
#2135
mschecht
opened
9 months ago
3
gene popover functionality
#2134
metehaansever
closed
9 months ago
15
v8
#2133
meren
closed
9 months ago
0
Inversion summary
#2132
FlorianTrigodet
closed
9 months ago
0
anvi-display-genome
#2131
17863952296
closed
9 months ago
0
Reaction network updates
#2130
semiller10
closed
9 months ago
0
Reaction network updates
#2129
semiller10
closed
9 months ago
0
[BUG] incompatibility between modules db and contigs db in metabolism self-test
#2128
semiller10
closed
9 months ago
1
[BUG] global command line args in anvi-setup-kegg-data
#2127
semiller10
closed
9 months ago
1
[BUG] datrie installation in anvio-dev with python 3.10
#2126
semiller10
closed
9 months ago
10
Master merged into new ui branch
#2125
metehaansever
closed
9 months ago
0
[FEATURE REQUEST] Documentation for metabolic reaction network toolkit
#2124
meren
closed
9 months ago
2
Metabolic network storage and KEGG database downloading
#2123
semiller10
closed
9 months ago
1
anvi-gen-genomes-storage complains about bad characters
#2122
17863952296
closed
9 months ago
1
Consolidating our KEGG data download
#2121
ivagljiva
closed
9 months ago
11
Searching for motifs in inverted repeats
#2120
FlorianTrigodet
closed
9 months ago
5
COG functions share the same enrichment score
#2119
Ahmed-Shibl
closed
10 months ago
1
installation problems
#2118
17863952296
closed
10 months ago
2
anvi-merge profile.db for many config.db
#2117
natchaphon602
closed
9 months ago
3
Problem in finding gene functions
#2116
tomkolan
closed
10 months ago
3
anvi-run-scg-taxonomy error
#2115
schmittel
closed
10 months ago
6
anvi-init-bam bug in anvio-dev branch
#2114
jwilliams648
closed
10 months ago
1
error :tarfile.ReadError: not a gzip file
#2113
17863952296
closed
10 months ago
1
Checksum checking for COG14 and addition to developers.yaml
#2112
Ge0rges
closed
10 months ago
1
[BUG] anvi-run-ncbi-cogs fails to run because checksum file is missing
#2111
dspeth
closed
9 months ago
8
Add checksum checking for NCI downloads in `anvi-setup-ncbi-cogs`
#2110
Ge0rges
closed
10 months ago
1
[DISCUSSION] Docstrings in codebase
#2109
valentynbez
opened
10 months ago
1
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