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merenlab
/
anvio
An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
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v8
#2133
meren
closed
11 months ago
0
Inversion summary
#2132
FlorianTrigodet
closed
11 months ago
0
anvi-display-genome
#2131
17863952296
closed
11 months ago
0
Reaction network updates
#2130
semiller10
closed
11 months ago
0
Reaction network updates
#2129
semiller10
closed
11 months ago
0
[BUG] incompatibility between modules db and contigs db in metabolism self-test
#2128
semiller10
closed
11 months ago
1
[BUG] global command line args in anvi-setup-kegg-data
#2127
semiller10
closed
11 months ago
1
[BUG] datrie installation in anvio-dev with python 3.10
#2126
semiller10
closed
11 months ago
10
Master merged into new ui branch
#2125
metehaansever
closed
11 months ago
0
[FEATURE REQUEST] Documentation for metabolic reaction network toolkit
#2124
meren
closed
11 months ago
2
Metabolic network storage and KEGG database downloading
#2123
semiller10
closed
11 months ago
1
anvi-gen-genomes-storage complains about bad characters
#2122
17863952296
closed
11 months ago
1
Consolidating our KEGG data download
#2121
ivagljiva
closed
11 months ago
11
Searching for motifs in inverted repeats
#2120
FlorianTrigodet
closed
11 months ago
5
COG functions share the same enrichment score
#2119
Ahmed-Shibl
closed
11 months ago
1
installation problems
#2118
17863952296
closed
11 months ago
2
anvi-merge profile.db for many config.db
#2117
natchaphon602
closed
11 months ago
3
Problem in finding gene functions
#2116
tomkolan
closed
11 months ago
3
anvi-run-scg-taxonomy error
#2115
schmittel
closed
11 months ago
6
anvi-init-bam bug in anvio-dev branch
#2114
jwilliams648
closed
11 months ago
1
error :tarfile.ReadError: not a gzip file
#2113
17863952296
closed
12 months ago
1
Checksum checking for COG14 and addition to developers.yaml
#2112
Ge0rges
closed
12 months ago
1
[BUG] anvi-run-ncbi-cogs fails to run because checksum file is missing
#2111
dspeth
closed
11 months ago
8
Add checksum checking for NCI downloads in `anvi-setup-ncbi-cogs`
#2110
Ge0rges
closed
1 year ago
1
[DISCUSSION] Docstrings in codebase
#2109
valentynbez
opened
1 year ago
1
Sra workflow update
#2108
FlorianTrigodet
closed
12 months ago
2
[BUG] anvi-display-pan, when I run the following command, the local interactive interface cannot pop up.....
#2107
Menggong-li
closed
1 year ago
1
[DISCUSSION] How can I get a .fasta format from the file 'MY-PAN.db', Thank you very much fror your reply.
#2106
Menggong-li
closed
1 year ago
1
Adding GTDB v214.1
#2105
ivagljiva
closed
1 year ago
1
Snakemake SRA_download workflow writes files in lieu of written fastq
#2104
mschecht
closed
1 year ago
1
Interactive interface, TypeError: Cannot read properties of undefined (reading '14')
#2103
metehaansever
closed
5 months ago
1
Filter partial gene calls
#2102
mschecht
closed
12 months ago
3
Updating the Python environment from 3.7 to 3.10
#2101
meren
closed
11 months ago
4
[FEATURE REQUEST] Organize contigs by length in interactive interface
#2100
mschecht
closed
1 year ago
3
[FEATURE REQUEST] update dbCAN2 → dbCAN3 for anvi-setup-cazymes
#2099
mschecht
opened
1 year ago
15
Compute inversion activity from pre-computed inversions
#2098
meren
closed
1 year ago
4
add @ctb to anvi'o developers
#2097
ctb
closed
1 year ago
2
Fix two typos in `anvi-import-collection.md`
#2096
ctb
closed
1 year ago
2
[FEATURE REQUEST] Expanding SCGs for anvi-estimate-scg-taxonomy
#2095
mschecht
opened
1 year ago
0
add a conda `environment.yml` file
#2094
ctb
closed
1 year ago
11
anvi-rename-bins_ Config Error
#2093
nahbergo
closed
11 months ago
5
[FEATURE REQUEST] Add "function" column to anvi-compute-functional-enrichment-across-genomes output
#2092
kellikmullane
closed
1 year ago
2
Replicate genome dendrogram
#2091
lucaz88
closed
1 year ago
3
[BUG] Unable to build KEGG db in non-standard location.
#2090
ac-simpson
closed
11 months ago
2
[BUG] Length mismatch error in anvi-run-hmms
#2089
Ge0rges
closed
1 year ago
8
Config Error of anvi-display-pan
#2088
DanielHan4545
closed
1 year ago
1
UI improvements
#2087
metehaansever
closed
1 year ago
2
[BUG] anvi-setup-ncbi-cogs error
#2086
Miseonn
closed
11 months ago
2
[FEATURE REQUEST] Option to automatically migrate dbs when running `anvi-export-contigs`
#2085
jolespin
closed
1 year ago
3
2043 bug support values can be misplaced in the interactive interface
#2084
metehaansever
closed
6 months ago
3
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