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Hi,
I tried to make the average Hi-C profile for hg38. So, I downloaded the hic files of 10 cell types for hg38 and created "KRobserved.gz" and "KRnorm.gz", respectively. Then I ran the 'makeAverageH…
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hello, i wonder What is the file in this path，or how to generate them.
thanks a lot
![d53ea62b7b23dbfdea6d0b72b89282f](https://github.com/tyh-19/Pipeline-for-multiomics/assets/154750598/bb86abdb-c…
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Hi there,
Any ideas about whether ABC can be used with single-cell ATAC-seq data?
Best,
David Green
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https://mp.weixin.qq.com/s/YdYT5dlsdfePh8e9NMlJSg
ixxmu updated
4 months ago
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The code runs fine with the example inputs but fails with KeyError using own inputs. Traced the problem back to my mm10 gene file and chromosome size file. Recreated both and ensured no trailing space…
pgh10 updated
11 months ago
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Hi,
First of all, thank you so much for sharing such an amazing analyzing tool for us.
I believe ActiveDriverWGS can help and move my project forward.
I think I can prepare equivalent files of "c…
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Please write your comments about the miRNA annotation guidelines in this issue.
Reported by: rachhuntley
Original Ticket: [geneontology/annotation-issues/1292](https://sourceforge.net/p/geneontology…
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I've followed the PBMC tutorial on my multi-ome data, and now am trying to perform the last step `run_scenicplus` which crashes with this error:
```
2023-10-26 23:37:42,920 SCENIC+_wrapper INFO …
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Dear Author,
I am deeply grateful for your development of such an outstanding tool. I have a question that might seem naive: I have already performed an ABC analysis based on my data and obtained a…
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Hello there, thanks a lot for developing this useful package and the user-friendly tutorial. I recently run FigR on my dataset and I would like to know what is the relevance of the 'dorcK' value in t…