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Ioannis Vlachos mentioned that we should include recommendation within the manuscript on the use of other annotation sets.
Specifically, recommend that when using a different gene annotation set (…
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Hi
I've just been going over the demo visualisation and noticed that the links within the Linear View: Annotations section has links to genes/repeats under the "Name" column which do not lead to th…
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Hi!
I used the following command to run the VarGen pipeline but I am getting the following error:
```
> disease_variants disease_annotation
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Hi! I'm having difficulty viewing and downloading databases for ericscript. I'm having this error message:
```
Warning message:
In system(paste("sh", file.path(ericscriptfolder, "lib", "bash", :…
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Currently frustrated when count matrix only has ENSG id, be it from ensemble or gencode
Is it possible for automation of ENSG conversion to HGNC symbol
Currently using biomart to identi…
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It seems there are currently two issues complicating the retrieval of patent data for targets, when starting with a ConceptWiki Target.
One is the missing conversion of HGNC names (Data source H, htt…
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See also #4 for the long discussion on this topic.
I would prefer to use CHEBI:1234 ; simply because then people see where the identifier comes from with more ease. HMDB also includes their databas…
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Hi,
We were testing ccAF on a small example dataset. Because the system is preinstalled with tensorflow 2.x we changed the actinn.py code into:
import tensorflow.compat.v1 as tf
tf.disable_v2_b…
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Hi Jessica and Arthur,
In GlyGen we have protein and glycan data for medically important virus species like SARS-CoV, and HCV. We are planning to submit the data for these species however the protein…
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When Kallisto is run on a fasta reference with the following header style:
>0 ENST00000456328.2 chr1+ 11869-12227,12613-12721,13221-14409
The feature ID appears as "ENST00000456328.2" in the abu…