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I'm testing minia using ~400 input fastq.gz files. I observed a strange segfault and was immediately curious if there might be something dependent on the number of input files. The input is ~60G or so…
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Here some segfault when using bcalm on a reference genome with small k
[Iterating DSK partitions ] 25 % elapsed: 0 min 6 sec remaining: 0 min 17 secwtf? traveller kmer = …
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I built `https://github.com/GATB/minia/releases/download/v3.2.0/minia-v3.2.0-Source.tar.gz`
When I run `minia` it prints:
```
Minia 3, git commit fatal: not a git repository (or any of the parent…
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From the manual:
_"For proper assembly, we rec- ommend that you use the Minia-pipeline that runs Minia multiple times, with an iterative multi-k algorithm.”_
Do you know where this script is?
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Hi,
I tried to run the example run-tiny.sh and it rises a segmentation fault.
I tried with a bigger input fasta file but with no better result.
It works only if I use -kmer-size 17, and no other si…
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Hi.
I'm using `Graph::create` to test some sequences. Then I find that in some special inputs, the lib will crash. One example is ["TCAG", "TCCA"] with kmer-size = 4. The code is in below:
`size_t…
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@joncison
I found some collection ids that have length > 50 which is not conforming to the schema 3.0.0 changes. Is this something we need to enforce, perhaps it can be 100.
Here is a list of a…
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Hi, I try to install GATB-Core on my computer and it's keep failing due to an error i don't understand.
It seems that CMake couldn't find ZLIB package in the the hdf5 thirdparty.
Obviously i do ha…
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Hello,
BCalm is a great program and we use it in several projects. However, its major limitation in practice is that it can't be installed from [Bioconda](https://bioconda.github.io/).
Would it …
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I'm not sure how to properly install GATB so that we can use it as a library. I've opened an issue here: https://github.com/GATB/gatb-core/issues/21
This is the work that we've done so far on this …