GATB gatb-core issues - Githubissues

GATB / gatb-core

Core library of the Genome Analysis Toolbox with de-Bruijn graph

https://gatb.inria.fr/software/gatb-core/

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issues

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Short term fix for undefined function on ARM Mac

#45 fgindraud opened 3 months ago
0
Support for aarch64 / M1 macs?

#44 tfenne closed 1 year ago
1
Tutorial links for videos and pdf are not responding

#43 Louis-MG opened 2 years ago
0
How to use Model Direct?

#42 LucasBarbosaRocha opened 3 years ago
1
-DNONCANONICAL doesnt work on osx?

#41 rchikhi opened 3 years ago
0
Reading BAM files

#40 mikael-s opened 3 years ago
4
Help Wanted

#39 anuradhawick opened 3 years ago
1
Please tag release to allow compilation of minia

#38 smoe opened 3 years ago
1
A different parallelisation granularity in GATB

#37 leoisl opened 3 years ago
2
Kmer size clarification

#36 mbhall88 closed 3 years ago
2
segmentation fault with the test code

#35 kemin711 closed 4 years ago
1
char* to const char* change for copy signature, also add string interface

#34 kemin711 closed 3 years ago
2
fix some compiler warnings

#33 Smattr closed 4 years ago
1
printf messes with type of size_t

#32 smoe closed 4 years ago
1
Correction of CMake version requirement

#31 hnikaein closed 4 years ago
0
problem with <boost/graph/adjacency_list.hpp>

#30 MinzhuXie closed 4 years ago
3
Change output representation of edges to Kececioglu-Myers (bcalm issue 42)

#29 amatur closed 4 years ago
1
compilation error with new version of AppleClang

#28 clemaitre closed 5 years ago
6
Memory reservation in dbgh5

#27 cguyomar closed 4 years ago
4
please create new release

#26 osallou closed 4 years ago
2
Segmentation fault when creating de Bruijn Graph

#25 Godotcoffee closed 5 years ago
1
Could not find ZLIB

#24 dizam92 closed 5 years ago
2
missing parts of HDF5

#23 julien-nc closed 4 years ago
3
Depth-first search on a graph

#22 mbhall88 closed 6 years ago
7
Setting install prefix

#21 ffranr closed 6 years ago
6
getDefaultProperties() bug

#20 rizkg opened 6 years ago
2
Question regarding queryAbundance(node) function.

#19 ddurai opened 6 years ago
8
Changing the path where the temp files trashme_* are created

#18 leoisl closed 6 years ago
2
compile error

#17 tiramisutes closed 5 years ago
2
Having some troubles with File of files

#16 leoisl closed 7 years ago
2
mphfKind is not stored in hdf5 file

#15 Piezoid closed 7 years ago
1
close some output information

#14 yuansliu closed 5 years ago
2
example error in mac

#13 yuansliu closed 7 years ago
7
Python bindings ?

#12 Piezoid opened 7 years ago
12
LoRDEC with GATB-core-1.2.xx

#11 erivals closed 5 years ago
2
BCALM 2 wtf: repart(max_minimizer) < repart(min_minimizer)

#10 NickSto closed 7 years ago
9
Convenience for programmers using lambda expression

#9 leoisl closed 8 years ago
2
Gatb-core v1.2.1 does not compile on old clang

#8 clemaitre closed 8 years ago
5
mac compilation problem tr1

#7 rizkg closed 8 years ago
13
GATB-Core GitHub repo cannot be used in a CMake external project

#6 karel-brinda closed 5 years ago
4
Missing parentheses in several expressions

#5 karel-brinda closed 8 years ago
4
be clear in the doc that Graph::buildNode() may return a real node, it's not necessarily fake.

#4 rchikhi opened 8 years ago
0
be clear in the documentation that Graph::contains() has false positives on arbitrary nodes

#3 rchikhi opened 8 years ago
0
add time complexities of Graph query operations in the documentation

#2 rchikhi closed 5 years ago
0
Bugfixes for kmer counting

#1 rchikhi closed 7 years ago
1