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- server on top of algorithms, does it exist or do we have to implement it?
- how should (if we can) limit the results output?
- Which algorithm (3 options) should we use? leave the option to the user…
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There is not much space, given that the "Ref. Seq." and "Genes" channels are fixed, and attempts to scroll to see the other channels (e.g. Variants, Variants: Fst - Global, Variants: Fst - WAF...) som…
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I am trying to retrieve the primateAI-3D score for a specific region using the web app (https://primad.basespace.illumina.com/).
It seems that when the web app view is regional (in oppose to gene-ce…
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Either add functionality to annotate different data sources (OMIM P, inheritance type, GeneCC, HPO based kidney groups, ClinVar variants) to the merged table in the merge script "MergeAnalysesSources.…
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This works by returning a list of variants that overlap with the genes - perhaps we're calling list() on a queryset? if the DB is huge, this is really slow.
Was running:
```
SELECT "annotation_varia…
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Modify view "Full data view for gene X" to show variants in the neighborhood of that gene even when they are not linked to any of its transcripts.
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Currently on the '[Assigned Variants](https://curator.populationgenomics.org.au/project/2/)' page there is no way to filter or sort variants that have been assigned to the user. This would be a useful…
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Usually the curation team asks us for all variants on a set of genes. This time around, they have asked for a specific list of variants [attached]. In addition to the usual process, this requires some…
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i.e. If there is a compound heterozygous situation, we would want to include both variants, and not leave one out even if it overlaps with another sample's variant.
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…