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Why is it that after I do the hippocampal subpartition segmentation in Freesurfer 6.0, the size of the hippocampus I get pieced together from the 22 subpartitions seems to be missing a portion of the …
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This file is a BBP internal format. It may also contains informations that are unrelated to bluepymm such as repair instructions.
We should have a much simpler format for the end user.
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**Description**
Some datasets in dissemination portals do have a Factsheet that exposes numerical value to characterise aspects of the datasets. Here is an example below taken from the Hippocampus Hub…
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``` python
import matplotlib
matplotlib.use('Agg')
import seaborn as sns
import urllib.request, json
import matplotlib.pyplot as plt
purkinje ={"id": 18, "name": "Cerebellum Purkinje cell", …
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I recently worked out the mean-field approximation of the spiking model of the hippocampus, more-or-less successfully. This process can be automated to a large extent.
The idea is to allow users to…
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In the invited talk given by Zoran Tiganj, some data on time cells was presented, both in PFC and in hippocampus. Showed the "some neurons fire a given amount of time into the trial" phenomenon, and …
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Whittington J C R, Muller T H, Mark S, et al. [The Tolman-Eichenbaum machine: Unifying space and relational memory through generalization in the hippocampal formation](https://www.sciencedirect.com/sc…
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Congratulations on the publication!
I am interested in trying it out with my own data and I have some questions:
1. Is the image size 256 x 256 the one you recommend?
2. Can one also use cell b…
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Very interesting tool!!
I have experience using cell2location for deconvolution of 10x visium spatial transcriptome data together with our in-house single cell datasets. Results have consistently …
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Hello,
I am running this:
TISSUE_GTEx=(Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_b…