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While working on the transcription guidelines paper we have noticed some inconsistencies with the refactored transcription regulator definitions and subclasses.
@colinlog @RLovering and I have mad…
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Hi, Just wanted to know how the enrichR_score is calculated. This score is output to the BED file when I use the exportR function.
I get scores like shown below:
enrichR_score:936
enrichR_score:…
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The bulk download includes documents that should be excluded.
@jvwong, would you list out the `status` values that should be included (`submitted` etc.)?
For example, here is one document that…
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Let's try the usecase:
* find all CD14 tracks and open narrowPeaks in browser.
* find all CD14 tracks and open *.bigWig for histone modifications in browser.
![image](https://user-images.github…
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I am running the pipeline in parallel and I am getting a failure on `encode_task_xcor.py` with the error below. What might be the problem?
```
Traceback (most recent call last):
File "/home/ckibe…
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I don't think we should have these compound modification terms:
increased histone H4-K5, H4-K8, H4-K12 and H4-K16 acetylation at centromere outer repeat during vegetative growth
a) it isn't su…
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Hey Daniel, I think that it would be better to use same options that the original paper used.
From the supplementary information:
"The identification of ChIP-seq enriched regions (peaks) in ea…
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@Chris7
I am running into difficulties using pyQuant and would be grateful for any advice.
The samples are neucode (duplex).
RAWs have been processed with MaxQuant (1.6.5) which incorporates a n…
rpm78 updated
4 years ago
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I am following your notebook on context free QA (thanks for setting that up). I am substituting your "natural_question" data set with BioASQ-training7b. I am only using "exact_answers" from BioASQ,…
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it is involved in
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
please delete
http://www.uniprot.org/uniprot/O14023
histone acetyltransferase activity
and
regulation of transc…