JetBrains-Research jbr issues

JetBrains-Research / jbr

JBR Genome Browser

https://doi.org/10.1093/bioinformatics/btab376

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issues

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Update JBR Application building pipeline for MacOS after deprecation of altool

#282 olegs opened 3 months ago
0
Fix scale when using absolute scores as transparency values

#281 Xewar313 closed 3 months ago
0
Track color change dialog is shown on the default monitor if several monitors is used

#280 iromeo closed 3 months ago
1
Refactor score as transparency level and score as absolute transperency level into one mutually exclusive context menu setting

#279 iromeo closed 3 months ago
0
Do not generate commands in UNDO/REDO stack when command actually doesn't change things

#278 iromeo closed 3 months ago
0
Zoom on wheel generates to many cmds in undo/redo stack

#277 iromeo closed 3 months ago
0
"Enter" shortcut doesn't allow to rename multiple tracks

#276 iromeo opened 3 months ago
0
Add autoscale and group scale to undo/redo history

#275 Xewar313 closed 3 months ago
0
IllegalStateException 490552362 Thread[pool-1-thread-7,5,main] NO group for

#274 iromeo closed 3 months ago
1
Add option to extract overlapping reads from bed tracks to separate file

#273 Xewar313 opened 4 months ago
0
Latest version of SPAN (1.5) is not supported?

#272 AlePur opened 4 months ago
1
Add enter title change to history

#271 Xewar313 closed 4 months ago
0
Add mouse location change to the history

#270 Xewar313 closed 4 months ago
0
Change Location - provide some details on location

#269 Xewar313 closed 4 months ago
0
Provide additional information on overlapped regions

#268 Xewar313 opened 4 months ago
0
Add notification on longer processes

#267 Xewar313 opened 7 months ago
0
Feedback: Select tracks by name

#266 iromeo closed 6 months ago
0
Show whether current session is modified

#265 iromeo opened 7 months ago
0
Feedback: Donwload track

#264 iromeo closed 6 months ago
0
Feedback: Panels Support

#263 iromeo closed 6 months ago
0
Enhance Redo/Undo so it control Track & Panel operations

#262 iromeo closed 4 months ago
0
Feedback on Region Selection Dialog

#261 iromeo closed 5 months ago
0
New session is appended to existing one ignoring new session panels structure

#260 iromeo opened 7 months ago
2
Allow to open 2bit file as sequence track

#259 iromeo opened 7 months ago
0
Allow to open GTF files as Genes tracks in JBR

#258 iromeo closed 5 months ago
0
Allow to change Score columen for CGI track + make actions similar to Bed track view when applicable

#257 iromeo opened 7 months ago
1
'Remove Panel and Tracks` is enabled when only a single (default) panel is used. Action doesn nothing and is better to disable it

#256 iromeo closed 7 months ago
0
Cannot remove panel if it is the first panel in the list

#255 Xewar313 closed 7 months ago
0
Improve usability of find missing file dialog

#254 iromeo closed 7 months ago
1
Grid doesn't match tracks

#253 iromeo closed 7 months ago
0
Allow to view overlap regions in region list dialog

#252 iromeo closed 5 months ago
0
Show score column & allow to sort by it in region selection tool

#251 iromeo closed 7 months ago
0
Add region selection tool

#250 Xewar313 closed 7 months ago
0
Panels are not saved in IGV session

#249 Xewar313 opened 8 months ago
0
Panels are not saved in JBR session

#248 Xewar313 closed 7 months ago
0
java.util.concurrent.CancellationException is constantly thrown on mouse move (see log)

#247 iromeo closed 9 months ago
0
Session export in IGV format doesn't include `type` tag in resource section

#246 iromeo opened 9 months ago
0
More output formats support in Overlap/Jaccard export dialog

#245 iromeo opened 9 months ago
0
Double Save Session dialog

#244 iromeo opened 9 months ago
0
Multiple track panels support.

#243 iromeo opened 9 months ago
1
Multiple tracks selection feature

#242 iromeo closed 8 months ago
0
Do not expand symlinks while creating tracks / saving session

#241 iromeo opened 9 months ago
0
Allow tracks creation by Drag & Drop a file into JBR window

#240 iromeo closed 9 months ago
0
Allow downloading track sources from remote

#239 Xewar313 closed 8 months ago
0
Allow to change BED format for tracks.

#238 iromeo closed 7 months ago
1
Detailed information at bed location perfomance could be improved

#237 iromeo closed 9 months ago
1
Change back and forward shortcut

#236 Xewar313 closed 9 months ago
0
Add progress dialog for export visilbe region as bam/sam

#235 iromeo closed 9 months ago
0
Add special support for RNA-Seq BAM files

#234 iromeo opened 10 months ago
0
Bigwig - show name of values adjustment in detailed view, e.g. if `log` is used

#233 iromeo closed 9 months ago
0