issues
search
JetBrains-Research
/
jbr
JBR Genome Browser
https://doi.org/10.1093/bioinformatics/btab376
11
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Do not show standard BED fields that are not covered by BED format in detailed cursor info
#232
iromeo
closed
11 months ago
0
Mention explicitly that position is 0-based in cursor info detailed dialog
#231
iromeo
opened
11 months ago
0
Use unique transcript id as a title of gene info dialog
#230
iromeo
closed
11 months ago
0
java.lang.IllegalArgumentException: screen X 804 coordinate out of range [0, 791)
#229
iromeo
closed
11 months ago
1
Load from ENCODE dialog hangs
#228
iromeo
closed
11 months ago
0
Adapt aux information according to the window size
#227
olegs
closed
11 months ago
0
Better size for information under cursor dialog
#226
iromeo
closed
11 months ago
0
ERROR TrackViewRenderComponent Prepare scales: FA05_hg38_pe.bam.filtered_dmr2337.v2.sam.bam.sorted.bam: [FAILED] after 24.16 ms
#225
iromeo
closed
11 months ago
0
Cannot invoke "htsjdk.samtools.SAMRecord.getAlignmentStart()" because "mate" is null
#224
iromeo
closed
11 months ago
0
NPE in GeneShelf.getGeneFromPoint(GenesTrackView.kt:644)
#223
iromeo
closed
11 months ago
0
Cursor lines stay after cursor is disabled
#222
Xewar313
closed
11 months ago
2
Save screenshots into clipboard
#221
iromeo
closed
11 months ago
0
Allow BAM track to be 20px height.
#220
iromeo
closed
11 months ago
0
RenderingKey(id=TRACK_DATA) not initialized on SessionOpen+Mouse Move
#219
iromeo
closed
11 months ago
1
Detailed info at mouse pointer dialog doesn't support closing by `ESC` press
#218
iromeo
closed
11 months ago
1
The wrong nucleotide is shown on mouse pointer for 'C' mismatch
#217
iromeo
closed
12 months ago
0
Enhance context menu behavior for multiple tracks selection if track has different value of some shared key
#216
iromeo
closed
11 months ago
1
Implement track info at cursor for basic track types
#215
iromeo
closed
11 months ago
3
Improve Information at position for bam track: show coverage + information about mismatches + methylation
#214
iromeo
closed
11 months ago
1
Allow to setup exact screenshot
#213
olegs
closed
6 months ago
2
Update TrackView detailed info at cursor dialog component
#212
iromeo
closed
12 months ago
0
Calculate info at cursor in background thread
#211
iromeo
opened
1 year ago
2
Add posibility to "append" session to open tracks instead of closing current session
#210
olegs
closed
11 months ago
0
Make methylation look different from other mismatches on small scale
#209
iromeo
closed
1 year ago
2
Fix Track context menu related dialogs position
#208
iromeo
closed
11 months ago
1
On track selection JBR always repains all tracks
#207
iromeo
opened
1 year ago
0
Add tooltip information when hovering over tracks
#206
Xewar313
closed
1 year ago
2
Add handling for bisulfite mismatches in BAM tracks
#205
Xewar313
closed
1 year ago
0
Improve BAM selection window
#204
Xewar313
closed
1 year ago
1
Recent BAM files are shown in recent session dialogs
#203
iromeo
closed
1 year ago
0
Remove direct dependency of BAM plugin on htsjdk
#202
Xewar313
closed
1 year ago
0
Show fraction of mismatches in BAM coverage bar
#201
Xewar313
closed
1 year ago
1
Add scale to BAM file coverage track
#200
Xewar313
closed
1 year ago
1
Calculate bam coverage using Fragments, not reads in PE libraries
#199
iromeo
closed
1 year ago
1
Support BAM files created using GRCh* chromosomes names
#198
iromeo
closed
1 year ago
2
UncheckedIOException: Error loading chrY from ~/.jbr_browser/genomes/hg38/hg38.2bit
#197
iromeo
closed
1 year ago
1
Axis ticks can be improved
#196
olegs
closed
9 months ago
0
Don't show multiple ticks in axis with same text
#195
olegs
closed
1 year ago
1
Session: Make session specific settings
#194
iromeo
opened
1 year ago
0
BAM: Hide reads detailed info, show only coverage
#193
iromeo
closed
1 year ago
1
BAM: Compact reads viewing mode
#192
iromeo
closed
1 year ago
1
Failed to create arithmetic track view
#191
olegs
opened
1 year ago
1
CGI track that could be enabled from 'View' menu could be used with overlap/jaccard function
#190
iromeo
closed
11 months ago
0
Consider adding mm39 genome reference to the JBR package
#189
olegs
opened
1 year ago
0
Tracks Overlap: SIMD optimization is not available for Apple Silicone
#188
iromeo
opened
1 year ago
1
Initial Bam Support
#187
iromeo
closed
10 months ago
0
New BED colouring option for scores that are pvalues
#186
iromeo
opened
1 year ago
1
Autoscale doesn't work with log2 transformation
#185
olegs
closed
1 year ago
0
JBR doesn't repaint track view when scale is changed from fixed to auto
#184
olegs
closed
1 year ago
0
Improve Span model track view for multiple locations mode
#183
olegs
opened
1 year ago
0
Previous
Next