JetBrains-Research jbr issues

JetBrains-Research / jbr

JBR Genome Browser

https://doi.org/10.1093/bioinformatics/btab376

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issues

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JBR doesn't repaint track view when scale is changed from fixed to auto

#184 olegs closed 1 year ago
0
Improve Span model track view for multiple locations mode

#183 olegs opened 1 year ago
0
Support two or more independent group of tracks in JBR

#182 olegs opened 1 year ago
0
Retina scaling broken on Mac OS

#181 olegs closed 1 year ago
0
IEA Trackview not in group - in JBR server mode

#180 olegs closed 2 years ago
0
Use jpackage from JDK17 for building applications

#179 olegs closed 1 week ago
5
Web UI is rendered incorrectly on Safari in Mac OS

#178 olegs closed 2 years ago
1
Overlap peaks tool shows anti-aliased fonts

#177 olegs closed 1 year ago
1
ERROR during adding large BED file in JBR

#176 olegs closed 2 years ago
1
Genomic position on header is not shown when capturing screenshot.

#175 olegs closed 2 years ago
0
Exception while loading SPAN 1.0 models into JBR latest version

#174 olegs closed 2 years ago
1
Preserve last opened tracks and add ability to reopen them after JBR restart

#173 olegs opened 3 years ago
0
Add action to re-add genes track once it was removed

#172 olegs closed 2 years ago
0
Export to IGV session doesn't show genes track

#171 olegs opened 3 years ago
0
Improve multiple track view by supporting part of BED track visualization

#170 olegs opened 3 years ago
2
Notify user that update is available for download

#169 olegs closed 2 years ago
0
Support a convenient way to load BED track into autocompletion.

#168 iromeo opened 3 years ago
1
Copy overlapped / distinct bed regions into clipboard or open as a new bed track

#167 iromeo opened 3 years ago
3
Jaccard index as alternative method for 'overlap' dialog

#166 iromeo closed 1 year ago
1
Sort values in About track view doesn't work

#165 olegs closed 1 year ago
0
Load tracks from ENCODE don't put tracks after selected ones in browser

#164 olegs closed 1 year ago
0
Negative summary length of peaks

#163 olegs closed 3 years ago
1
Error loading zero bytes track with index

#162 olegs opened 3 years ago
1
NPE during large overlap picture shown

#161 olegs opened 3 years ago
0
Support open with JBR for yaml session files

#160 olegs opened 3 years ago
0
Turning off cursor view don't cleanup positions lines

#159 olegs opened 3 years ago
0
JBR web server problem with opening link when genome position is explicitly provided and equal to session location

#158 olegs opened 3 years ago
0
Generate less undo/redo commands while scrolling track using mouse

#157 iromeo closed 3 years ago
1
Binary idx file is opened as empty BED

#156 olegs opened 3 years ago
0
Overlap is not 100% for bed tracks with same regions

#155 iromeo opened 3 years ago
0
Search BED/BIGBED track region by name

#154 iromeo opened 3 years ago
0
Missing file dialog usability issues.

#153 iromeo opened 3 years ago
0
Synapse integration

#152 iromeo opened 3 years ago
0
Support `*.gff3.gz` files as Genes annotations source

#151 iromeo opened 3 years ago
3
Genomes editing UI usability issues - cannot register CHM13 genome

#150 iromeo opened 3 years ago
1
Support opening older sessions

#149 receed opened 3 years ago
0
Support locating missing paths from session

#148 receed closed 3 years ago
1
Cannot load some BigWig via HTTP link, but ok via FTP link

#147 iromeo opened 3 years ago
4
Support `,` decimal separator

#146 iromeo opened 3 years ago
0
Overlap matrix: show row/cols selection

#145 iromeo opened 3 years ago
0
BED track about info - give more stats on peak length distribution.

#144 iromeo opened 3 years ago
0
Support overlap that do not merge track peaks

#143 iromeo opened 3 years ago
0
Support flanking region support in JBR overlap feature

#142 olegs opened 3 years ago
0
Support various positions separator support to input field.

#141 olegs opened 3 years ago
0
Support CSV files with ';'

#140 iromeo opened 3 years ago
0
BigWig resolution lowering options may lead to confusing rendering at large zoom

#139 iromeo closed 3 years ago
2
Wig file: 'unexpected section: 1'

#138 iromeo opened 3 years ago
0
Wrong version string in JBR 1.0.5320

#137 olegs closed 3 years ago
2
Filtered BED tracks not saved to IGV / UCSC sessions

#136 dievsky opened 3 years ago
0
Cannot open *.wig file: unexpected section chr1

#135 iromeo opened 3 years ago
0

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