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Add a "decoy" flag here:
https://github.com/OpenMS/OpenMS/blob/develop/src/openms/source/FORMAT/MascotGenericFile.cpp#L85
and then probably here check if it is set:
https://github.com/OpenMS/…
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Have a way to handle having multiple raw files open at the same time. Think about how to select from where to load the spectrum to annotate.
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Assuming I have an retention time range and an m/z range, what would be the fastest/easiest way to extract the intensity values within these ranges from an mzDB file?
Looking through the exported m…
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```
Eric posted this to the PSI-PI list, so copied here for tracking:
By way of background, we at ISB have been testing to the ProteoWizard idconvert
tool to convert our TPP output (pepXML & protXML…
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### Describe the question or discussion
I just came across a problem in my parser, as basically all PSM scores from search engines are defines as "is_a: MS:1001143 ! PSM-level search engine specific …
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Hi,
I've run tide-search with `--compute-sp T`, but the `sp score` columns of tide-search.target.txt and tide-search.decoy.txt are completely zero (no PSM has a non-zero sp score). I'm wondering if…
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Hi Bo,
I was looking for a way to interpret the values in some of the columns in psm_rank.txt file and wonder there is a detailed documentation for these numbers, other than the one given in the […
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```
Eric posted this to the PSI-PI list, so copied here for tracking:
By way of background, we at ISB have been testing to the ProteoWizard idconvert
tool to convert our TPP output (pepXML & protXML…
-
Dear all,
Julian told me that I can request new CV entries here. Ideally we would like to have all the metrics that we are taking into account in the QCloud (see Table 1 of our paper http://journa…
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Hello,
When importing a psdb in linux (command line), it's required that the data folder inside searchgui_out.zip is present.
For example, if the psdb file is at /data/test, there needs to be a …