vogelwk psi-pi issues - Githubissues

vogelwk / psi-pi

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Required attributes on SpectrumIdentificationItem

#85 GoogleCodeExporter opened 8 years ago
0
Unusual characters in peptides, proteins or pre/post attributes

#84 GoogleCodeExporter opened 8 years ago
0
Bug in thresholds CV terms allowed in file

#83 GoogleCodeExporter opened 8 years ago
0
Support for de novo and other approaches without canonical proteins

#82 GoogleCodeExporter opened 8 years ago
4
Command line validation

#81 GoogleCodeExporter opened 8 years ago
2
Support for peptide-level properties in future versions

#80 GoogleCodeExporter opened 8 years ago
1
Unknown start and end indices in PeptideEvidence

#79 GoogleCodeExporter opened 8 years ago
2
Representing TPP probabilities

#78 GoogleCodeExporter opened 8 years ago
2
Guidelines for multiple search engine results

#77 GoogleCodeExporter opened 8 years ago
5
Support for crosslinking in mzid

#76 GoogleCodeExporter opened 8 years ago
1
Support for multiple runs in mzid

#75 GoogleCodeExporter opened 8 years ago
5
retention time should be allowed in files, specification document currently suggests otherwise

#74 GoogleCodeExporter closed 8 years ago
6
Schema/validation issues

#73 GoogleCodeExporter opened 8 years ago
1
mzIdentML version1.1: dbSequence_ref on PDH should be mandatory

#72 GoogleCodeExporter opened 8 years ago
2
Modification localization

#71 GoogleCodeExporter opened 8 years ago
3
CV requests

#70 GoogleCodeExporter closed 8 years ago
8
phone and fax for persons and organizations

#69 GoogleCodeExporter opened 8 years ago
4
No 'type' attribute for UserParam

#68 GoogleCodeExporter closed 8 years ago
2
Zero or more "Affiliations" elements

#67 GoogleCodeExporter closed 8 years ago
3
Organization email attribute

#66 GoogleCodeExporter closed 8 years ago
6
mzIdentML-mapping_1.1.0.xml

#65 GoogleCodeExporter closed 8 years ago
1
how to define explicite neutral loss as INPUT of a SPectrumIdentificationProtocol

#64 GoogleCodeExporter closed 8 years ago
0
report of neutral losses

#63 GoogleCodeExporter closed 8 years ago
3
Issues from Korean community

#62 GoogleCodeExporter closed 8 years ago
5
Search engine input parameters in the CV

#61 GoogleCodeExporter closed 8 years ago
4
PeptideEvidenceList/EnzymeRefs

#60 GoogleCodeExporter closed 8 years ago
5
Reducing attribute redundancy

#59 GoogleCodeExporter closed 8 years ago
5
PeptideEvidenceList/@id needed?

#58 GoogleCodeExporter closed 8 years ago
4
Modifications that cannot be found in UniMod

#57 GoogleCodeExporter closed 8 years ago
8
PeptideEvidence in mzIdentML

#56 GoogleCodeExporter closed 8 years ago
6
no differentiation between peptide / protein mod. specificity

#55 GoogleCodeExporter closed 8 years ago
4
Suggestions for schema updates

#54 GoogleCodeExporter closed 8 years ago
3
Encoding spectrum identifiers for MGF, PKL and DTA files

#53 GoogleCodeExporter closed 8 years ago
38
numResidues is type xsd:int

#52 GoogleCodeExporter closed 8 years ago
2
Issues with the spec doc

#51 GoogleCodeExporter closed 8 years ago
7
Taxonomy for each protein (DBSequence)

#50 GoogleCodeExporter closed 8 years ago
3
Issues / schema updates prior to version 1 release

#49 GoogleCodeExporter closed 8 years ago
21
calculatedMassToCharge and sequenceMass have the same information

#48 GoogleCodeExporter closed 8 years ago
4
The name of AnalysisXML

#47 GoogleCodeExporter closed 8 years ago
5
Problems encountered during the document process

#46 GoogleCodeExporter closed 8 years ago
1
Number of peptides / proteins to be reported

#45 GoogleCodeExporter closed 8 years ago
6
Issues with all instance docs

#44 GoogleCodeExporter closed 8 years ago
28
attribute numSequencesSearched of <SearchDatabase>

#43 GoogleCodeExporter closed 8 years ago
1
Issues with the CV

#42 GoogleCodeExporter closed 8 years ago
97
Things to submit into DocProc

#41 GoogleCodeExporter closed 8 years ago
6
Instance document examples: N15 (Mascot)

#40 GoogleCodeExporter closed 8 years ago
3
Instance document examples: top-down (Mascot)

#39 GoogleCodeExporter closed 8 years ago
2
future extensions

#38 GoogleCodeExporter opened 8 years ago
5
mono or average masses

#37 GoogleCodeExporter closed 8 years ago
6
OntologyCollection

#36 GoogleCodeExporter closed 8 years ago
3