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Hi everyone!
I’m using the arrow command **arrow annotations load_gff3** to load a full GFF3 into an annotation track, but nothing's happening.
**The version of my plugin:**
apollo 4.2.13
**…
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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We would like to 'merge' these two processes:
GO:0019933 cAMP-mediated signaling & regulation children
GO:0010737 protein kinase A signaling & regulation children
That would capture the signali…
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Key points for introduction:
- What are genome annotations? What type of features are included in genome annotations (protein-coding genes, pseudogenes, RNAs etc)? What sorts of things do biologists …
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THis is mitochondrial termination factor
- [ ] Mterf4 | mitochondrial transcription termination factor 4 | | protein targeting to mitochondrion | | MGI | Mus musculus | IMP | | cgi-12 protein…
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So this is the "killer app" for annotation extensions. It will enable us to build networks.
EsyN is great for network building, but we only really need to connect nodes with edges (with better lab…
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This ticket is meant as a reference point to summarise concerns about protein dimerization activity + protein oligomerization terms, and to collect links to previous discussions and proposals. Hopeful…
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Hi there,
I have got an error at stage 5 indicating that the header of fasta files are not correct:
processing file GCF_014441545.1_ROS_Cfam_1.0_protein.fasta
The ID on def line '>GCF_014441545.1_R…
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SIB curators are moving from free text annotation describing the effects of variation on protein structure and function, e.g. "reduces protein stability", "interferes with zinc binding". They have fig…
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Hi All,
I'm working on this project where I add light and heavy-labeled peptides together, mix them and run on an Orbitrap, using LC-DIA.
Interestingly, when I create my own peptide library usi…