galaxy-genome-annotation python-apollo issues

galaxy-genome-annotation / python-apollo

Python library for talking to Apollo API

MIT License

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issues

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Can't load_gff3

#63 RenanFerreira0412 opened 2 months ago
7
Explore dropping CDSs

#62 hexylena opened 5 months ago
2
maximum biopy

#61 hexylena closed 5 months ago
4
load_gff3 miscalculates CDS

#60 mpoelchau opened 7 months ago
13
loading reserved (or other) attributes in load_gff3

#59 mpoelchau opened 10 months ago
2
AttributeError: 'Context' object has no attribute 'gi'

#58 mpoelchau closed 10 months ago
2
Am I doing this wrong?

#57 jaspwn opened 1 year ago
2
biopython dependency error

#56 jaspwn closed 1 year ago
2
arrow load_gff3 error

#55 pwilx666 opened 2 years ago
7
Be less strict on requirements

#54 abretaud closed 3 years ago
0
returning username should not scrub out the username

#53 nathandunn closed 3 years ago
1
Release 4.2.11

#52 abretaud closed 3 years ago
0
reports the correct version now

#51 nathandunn closed 3 years ago
4
Remove printout from load_gff3

#50 AlexanderThomasJulian opened 3 years ago
0
should fix the addition of the Shine_Dalgarno_sequence

#49 nathandunn closed 3 years ago
2
if Shine Dalgarno is attached as evidence it gets rendered as an exon

#48 nathandunn closed 3 years ago
5
Merge upstream

#47 nathandunn closed 3 years ago
0
Switch to GA

#46 abretaud closed 3 years ago
0
4.2.9 bump, update_organism bugfix

#45 MoffMade closed 3 years ago
1
add suppress_output to update_organism

#44 MoffMade closed 3 years ago
0
update 4.2.6/4.2.7 changelog

#43 abretaud closed 3 years ago
0
Fix 4.2.7

#42 nathandunn closed 3 years ago
0
returnAllOrganisms parameter for add_organism

#41 MoffMade closed 3 years ago
1
Expose the returnAllOrganisms paramater for AddOrganism

#40 MoffMade closed 3 years ago
3
Prevent from displaying login/password in the logs

#39 abretaud closed 3 years ago
0
add apollo3 compliance

#38 nathandunn closed 3 years ago
3
Remove dead code (fixes #35)

#37 abretaud closed 4 years ago
0
fixed path for apollo3

#36 nathandunn closed 4 years ago
0
remove unused methods in canned keys, comments, values, and statuses

#35 nathandunn closed 4 years ago
0
Remove unused dep

#34 abretaud closed 4 years ago
0
begin to refactor gff3

#33 nathandunn closed 4 years ago
5
Fix default apollo test

#32 nathandunn closed 4 years ago
1
Bug in load_gff3

#31 abretaud closed 4 years ago
7
fix readme

#30 abretaud closed 4 years ago
0
added bulk load gff3

#29 nathandunn closed 4 years ago
11
make internal volume mount relevant

#28 nathandunn closed 4 years ago
2
Groups fix + tests

#27 abretaud closed 4 years ago
0
Improve user update method + add tests

#26 abretaud closed 4 years ago
0
WIP - no merge - Replace apollo perl script

#25 nathandunn closed 4 years ago
1
addSequenceAlterations in load_gff3 script

#24 nathandunn closed 4 years ago
0
Prepare 4.1 release

#23 abretaud closed 4 years ago
0
Update organism: reloading only SOME sequences

#22 abretaud closed 4 years ago
2
initial add of dockerization of tests

#21 nathandunn closed 4 years ago
1
fix undefined add_attributes function in load_gff3

#20 abretaud closed 4 years ago
0
4.0.1: fix missing file in 4.0

#19 abretaud closed 4 years ago
0
Fix metadata test

#18 nathandunn closed 4 years ago
17
Move here some code from galaxy tool

#17 abretaud closed 4 years ago
0
Add support for organism remote update

#16 abretaud closed 4 years ago
0
Bulk creation/deletion of groups

#15 abretaud closed 5 years ago
2
Various updates

#14 abretaud closed 5 years ago
3