-
Hi! I am trying to generate molecules based on MTOR and MEK1 as written in the Github repo, but I am missing the `ligand_smiles.txt` for both protein, as stated in the `scoring_definition.csv`. Are bo…
-
Hello Rui,
I still have several questions about the codes:
1: # strandFlipped from function "TU_prep"; if any experiment prepared first-in-pair read on reverse strand, then "strandFl…
-
Hello Josh,
I am thinking of the possibility of using DeeplyTough as an embedder for protein pockets, so that each pocket is mapped to a vector of descriptors. Could you provide some guidance on ho…
vinbl updated
2 years ago
-
Hi Protein Folding team. After I ran the cloud formation stack per link provided in the readme, I opened a SageMaker JupyterLab session and than ran the instructions to do manual load per instruction…
-
Roadmap:
- We will limit ourselves to the annotation providers gencode and ensembl for now.
- We will try to stay ID centric where possible, ie route mappings through IDs.
Basic improvements to c…
-
https://beta.openphacts.org/1.4/target/tree/pharmacology/pages?uri=http%3A%2F%2Fpurl.uniprot.org%2Fenzyme%2F1.-.-.-&app_id=XXX&app_key=XXX&target_organism=Homo+sapiens&min-pChembl=7&_pageSize=all retu…
-
Just ran a ["what may treat T2D" on test](https://ui.test.transltr.io/main/results?l=Type%202%20Diabetes%20Mellitus&i=MONDO:0005148&t=0&r=0&q=4726a165-1a3d-47f5-a9dd-fe8ba4c0e120) and was surprised to…
-
From https://wiki.openphacts.org/index.php/SureChEMBL
> Compounds are assigned SureChEMBL identifiers as used in the SureChEMBL interface and download files. Please note these identifiers have no rel…
stain updated
8 years ago
-
Hi,
I am encountering an error when using your tool to with structures produced by ColabFold.
Example command used:
```
perl protocol_QSproteome_single_uniprot.pl \
--pdb OG0002542.represe…
-
Exploring the module, looks pretty decent. However, every attempt running specific mode reverts back to run 'largest' instead:
- from pymol GUI, it creates a config file saying mode=largest and run…