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theislab
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sfaira
data and model repository for single-cell data
https://sfaira.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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cellxgene data loaders not working
#742
Rubbert
opened
2 weeks ago
0
Release
#741
le-ander
closed
8 months ago
0
Merge pull request #739 from theislab/dev
#740
le-ander
closed
8 months ago
0
Merge pull request #367 from theislab/release
#739
le-ander
closed
8 months ago
0
small change to eliminate obsolete np.int calls
#738
vjcitn
closed
9 months ago
3
Looking for more background info
#737
vjcitn
opened
12 months ago
1
Empty cache folder
#736
yiqisu
closed
8 months ago
4
Number of datasets significantly changed
#735
yiqisu
closed
8 months ago
4
AttributeError with streamline_features
#734
yiqisu
closed
8 months ago
2
added suspension type into sfaira field IDs
#733
davidsebfischer
closed
8 months ago
1
data/d10_1038_s41592_021_01344_8
#732
irena-starters
closed
1 year ago
0
fix caching behaviour of export_h5ad command
#731
le-ander
closed
8 months ago
0
data/d10_1038_s41586_020_1962_0
#730
irena-starters
closed
1 year ago
0
data/d10_1016_j_cell_2021_07_003
#729
irena-starters
closed
1 year ago
0
data/d10_1038_s41592_018_0255_0
#728
irena-starters
closed
1 year ago
0
data/d10_1016_j_stem_2020_02_002
#727
szalata
closed
1 year ago
0
add dataloader
#726
le-ander
closed
1 year ago
0
Add Huang, 2021 (d10_1016_j_stem_2021_04_006)
#725
katelynxli
closed
1 year ago
0
add Miura, 2020 hStrS (d10_1038_s41587_020_00763_w)
#724
katelynxli
closed
1 year ago
0
custom metadata terms
#723
le-ander
closed
1 year ago
0
data/d10_1038_s41591_020_1043_9
#722
irena-starters
closed
1 year ago
0
data/d10_1016_j_stem_2019_08_002
#721
irena-starters
closed
1 year ago
0
enable store subsetting by prefix / excluded prefix
#720
le-ander
opened
1 year ago
0
data/d10_1016_j_cell_2020_11_017
#719
szalata
closed
1 year ago
1
move section of cellxgene export adapter concerning var from streamline_obs_uns() to streamline_var()
#718
le-ander
opened
1 year ago
0
add dataloader for Marton, 2019 (d10_1038_s41593_018_0316_9)
#717
katelynxli
closed
1 year ago
0
adding dataloader for Fiorenzano, 2021 (d10_1038_s41467_021_27464_5)
#716
katelynxli
closed
1 year ago
0
data/10_1038_s41380_020_0844_z
#715
irena-starters
closed
1 year ago
0
adding dataloader for Sloan, 2017 (d10_1016_j_neuron_2017_07_035)
#714
katelynxli
closed
1 year ago
0
data/d10_1016_j_stem_2018_12_015
#713
irena-starters
closed
1 year ago
0
Removal of gene version from ensembl IDs broken
#712
le-ander
opened
1 year ago
0
Data/d10 1101 2022 10 24 513487
#711
katelynxli
closed
1 year ago
1
Documentation build check not passing on dev
#710
le-ander
opened
1 year ago
0
data/d10_1038_nature22330
#709
irena-starters
closed
1 year ago
0
data/d10_1038_s41586_019_1289_x
#708
szalata
closed
1 year ago
4
data/d10_1038_s41586_021_03343_3
#707
le-ander
closed
1 year ago
0
dataset: fused cells from 2 organisms
#706
le-ander
closed
1 year ago
3
Data/d10 1101 2022 10 24 513487
#705
katelynxli
closed
1 year ago
2
fix single cell portal donwload links and paths
#704
le-ander
closed
1 year ago
3
Annotation of dataloader with two distinct disease obs keys fails to generate disease annotation files
#703
LisaSikkema
closed
8 months ago
0
fixed store discovery on macos
#702
davidsebfischer
closed
1 year ago
0
d10_1126_science_aaz5626
#701
katelynxli
closed
1 year ago
1
sfaira finalize-dataloader broken after cellxgene 3.0 schema introduction
#700
le-ander
closed
1 year ago
6
added suspension type into CLI and removed logging from CLI
#699
davidsebfischer
closed
1 year ago
0
Update labels for metadata key "assay_type_differentiation"
#697
le-ander
opened
1 year ago
1
account for case where only doi_preprint is set
#696
le-ander
closed
1 year ago
3
Universe.subset() throws weird error when key="doi"
#695
le-ander
closed
1 year ago
1
Cellxgene schema 3.0.0 breaks dataloader
#694
emdann
closed
8 months ago
5
d10_1016_j_molmet_2022_101595
#693
sophietr
opened
1 year ago
0
Read timed out
#692
Cem-Gulec
closed
1 year ago
0
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