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Hi;
We need terms for the following tools and their scores:
**MSFragger**
**PeptideProphet**
- peptideprophet probability
**ProteinProphet**
- proteinprophet score
- protein group …
prvst updated
5 years ago
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# Describe the problem - seems to be a memory issue - have 16 Gb
* **I'm submitting a:**
- [ ] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **…
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# Describe the problem
* **I'm submitting a:**
- [ ] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:
Open_ search …
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# Describe the problem
* **I'm submitting a:**
- [x ] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [ x] _Close…
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Hi all,
I'm trying to test MSFragger on a single mzML file (1.5GB) and a reference human database from Uniprot (55 MB, including decoys) but MSFragger keeps failing giving the following error:
Er…
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Hello!
I'm attempting to analyze a DDA HLA-II immunopeptide file using FragPipe (v9.1) with MSFragger (v20190222) and Philosopher (v20190405). It wasn't clear on what executable to include for Python…
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# Describe the problem
* **I'm submitting a:**
- [X] problem running the software
- [?] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [ ] _Closed_…
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Hello I think I found a bug. Else I cant make sense out of it.
After running the analysis in the same way as described in the wiki. I can find in the proteins.fas and protein.tsv a few proteins that …
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# Describe the problem
* **I'm submitting a:**
- [X] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [X] _Closed_…
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I use the command line to process the MSFragger,but the result files which genarated by MSFragger were not be understand when I want to found the identified PSM, peptides and proteins. another questio…