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## C-PAC Run Info
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Hello,
I've been working with CARLIN data using the prior MATLAB pipeline and was very excited to migrate to this improved snakemake_DARLIN implementation for batch submissions. I would like to run t…
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I can't find any information related to that "probe mode", and the probe mode seems to ruin my pipeline. I hope someone could find me a fix or tell me where might I get wrong.
Here is the pipeline …
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## Proposal Summary
Some pipeline steps, especially after quality control should be able to pause the execution of the pipeline and prompting the user for confirmation before proceeding to the next s…
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https://github.com/talkowski-lab/gnomad-sv-pipeline/blob/master/gnomad_sv_pipeline_wdls/module_01/01_depth_clustering_by_chrom.wdl
I noticed that the call on make_rdtest_bed didn't include a script…
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Hi,
I am having the following issue. Any help will be appreciated.
A problem with the BLAST results file /primerdesign/Lactobacillus_curvatus/Pangenome/results/primer/primerblast/primer_0_result…
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MSID: 94743
Version: 4
Preprint DOI: https://doi.org/10.1101/2023.12.19.572357
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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Here is a review on the last training I did on ann nnU-Net for spinal canal segmentation.
I went back on the data I used for the previous training and the data used for [the kaggle competition](https…
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However, given that there are multiple models in deepseg, this feature will not be straightforward. It will be part of the major refactoring.
I'm just opening the issue for prosperity, because of …
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As TL I would like to improve the work_started report columns so that more studies get an actual date rather than NULL so that the report is more useful.
**Acceptance Criteria**
- [ ] The majority o…