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biologger
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speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
GNU General Public License v3.0
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No GFF file
#31
vupadhyay-code
opened
1 month ago
9
AnnotRptUrl DTD Error
#30
vupadhyay-code
closed
1 month ago
1
OSError: [Errno 30] Read-only file system: '/pipeline/tmp_config.json'
#29
c-berruto
opened
2 months ago
2
How to run without Doctor container?
#28
MonicaSteffi
opened
2 months ago
2
Error during Entrez.efetch
#27
fbartusch
closed
5 months ago
11
design for multi-copy core genes
#26
aiqubo
closed
1 month ago
1
Design primers for unknown bacteria species
#25
penguin335
closed
11 months ago
2
Single results file not created
#24
JensPee
opened
1 year ago
1
No BLAST DB was found
#23
dominik1106
closed
1 year ago
2
md5 checksum failure
#22
noah472
opened
1 year ago
3
XML file is empty
#21
vetrabindra01
opened
1 year ago
4
Genome downloads failing:
#20
Pseudonymonas
closed
1 year ago
1
Could you record a video showing the whole process of using this software
#19
Liu-senjun
closed
1 year ago
3
Serovar level
#18
miRNA67
opened
2 years ago
1
Probe seq empty?
#17
Anto007
opened
2 years ago
5
How to apply speciesprimer in my scenario?
#16
Anto007
closed
2 years ago
5
SpeciesPrimer not compatible with rootless docker?
#15
Mike1359
opened
2 years ago
0
primer pairs left after secondary amplicon QC
#14
Longhx1112
opened
2 years ago
3
Already in excludedassemblies
#13
lanying
closed
2 years ago
2
You need to provide at least 2 files to build a pan genome
#12
lanying
closed
2 years ago
1
Error: "No .gff files found for QualityControl rRNA"
#11
amoghpj
closed
3 years ago
3
conda recipe?
#10
nick-youngblut
opened
3 years ago
1
List of good target binding primers
#9
marcomeola
opened
3 years ago
2
gene_presence_absence.csv file interpretation
#8
Lorenzomicro
closed
3 years ago
1
Decode the gene name from the results table
#7
Lorenzomicro
closed
3 years ago
2
Pause SpeciesPrimer
#6
Lorenzomicro
opened
3 years ago
2
Pathovar level
#5
Sirbius
opened
4 years ago
5
primer_1_results.xml absent?
#4
aiqubo
closed
4 years ago
8
ValueError: Your XML file was empty
#3
aiqubo
closed
4 years ago
1
Design primers for viruses
#2
aiqubo
opened
4 years ago
5
blastdb download
#1
aiqubo
closed
4 years ago
4