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I tried running my normal job setup on a gpvm.
It failed in several places.
apptainer run -B /cvmfs,/exp/dune,/nashome,/pnfs/dune,/opt,/run/user --ipc --pid /cvmfs/[singularity.opensciencegr…
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Hi,
I tried running the command like provided:
snakemake --snakefile /media/uhlemannlab/terry/Rika/scripts/TrEMOLO/run.snk --configfile /media/uhlemannlab/terry/Rika/scripts/TrEMOLO/config.yaml
a…
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### Solution to issue cannot be found in the documentation.
- [X] I checked the documentation.
### Issue
Hi,
when trying to run singularity I got an error regarding unsquashfs not being able to …
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Hello Vanessa,
I installed Tunel and I was able to lunch the GUI interface. But everything is super slow to the point that it's not usable. Any idea what I could be missing? Clicking any button tak…
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Hello,
while testing `singularity-cli` I encountered a problem with `instance.run_command` method.
see:
```
from spython.main import Client
a = Client.instance('/my/image.sif', name='foo')
a.…
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toil_container version: 1.1.6
Python version: 3.9.4
Operating System: Ubuntu 20.10
### Description
Currently the most useful entry point to `toil_container()` is the `call()` function of `Cont…
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Hi, there,
Could you please help me with this. It seems to be stuck on the trimming level, while calling java?
activated the /scratch/tgeorgom/bulker/bulker_crates/databio/pepatac/1.0.12 image
Th…
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The following are unlinked (check the box if they become linked):
- [ ] AIChE_VM.md
- [ ] Author_Data.md
- [ ] Reading_papers.md
- [ ] Clusters.md - needs update
- [ ] Scientific_Progression_Be…
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Dear Nicholas,
First of all, happy 2020 :)
I have been attempting to run the latest singularity image but I am encountering a few issues:
1) analysis of the test dataset completes with no errors …
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I have come across a few lessons that we probably should be tracking somehow:
- https://github.com/PDC-support/introduction-to-mpi/ (has display options for C/Fortran/Python!)
- https://github.com…