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papaemmelab
/
toil_container
:whale: Toil + Docker and Singularity.
MIT License
9
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6
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Reduce queries to bparams and lsfadmin
#33
juanesarango
closed
2 years ago
2
🚀 upgrade to toil 5.5.0 and fix breaking changes
#32
ddomenico
closed
2 years ago
1
Toil 5.x upgrade
#31
juanesarango
closed
3 years ago
4
use `shell=True` in `subprocess.check_output`
#30
juanesarango
opened
3 years ago
0
Unpin dependencies; fix minor bugs; fix compatibility with new Toil
#29
multimeric
closed
3 years ago
1
Refactor the way options are provided
#28
multimeric
opened
3 years ago
5
Unpin dependencies
#27
multimeric
closed
3 years ago
5
🚀 add support for singularity 2.6.1
#26
jsmedmar
closed
5 years ago
1
🐛 actually fix encapsulated jobs
#25
mflevine
closed
5 years ago
0
🐛 support lsf encapsulated jobs
#24
mflevine
closed
5 years ago
1
💎bump version to 1.1.0
#23
mflevine
closed
5 years ago
0
🚀 add support to resubmit jobs when killed by LSF
#22
jsmedmar
closed
5 years ago
0
🚀 add LSF 10 support
#21
jsmedmar
closed
6 years ago
1
🐛 jobName must be slugified
#20
jsmedmar
closed
6 years ago
1
🐛 remove subprocess32 as main dependency
#19
juanesarango
closed
6 years ago
1
🚀 add help container feature
#18
jsmedmar
closed
6 years ago
2
cwd must be an absolute path
#17
jsmedmar
closed
6 years ago
0
🚀 use isolated tmp (resolves #15)
#16
jsmedmar
closed
6 years ago
1
Use --containall and user specific tmp directory for singularity call
#15
jsmedmar
closed
6 years ago
2
🚀 add support for LSF runtime and internet
#14
jsmedmar
closed
6 years ago
1
Add a Gitter chat badge to README.md
#13
gitter-badger
closed
6 years ago
0
🔧 short long description for pypi
#12
jsmedmar
closed
6 years ago
1
🔧 toil feedback refactor
#11
jsmedmar
closed
6 years ago
1
fix setup.json that is not included in the wheels distribution
#10
juanesarango
closed
6 years ago
1
Only deploy to PyPi with tags on master
#9
jsmedmar
closed
6 years ago
1
:white_check_mark: improve container testing
#8
juanesarango
closed
6 years ago
1
Add authors
#7
jsmedmar
closed
6 years ago
1
add codecov badge
#6
jsmedmar
closed
6 years ago
0
:wrench: fix tree other commits
#5
juanesarango
closed
6 years ago
0
fix the cache again
#4
jsmedmar
closed
6 years ago
0
Travis singularity cache
#3
jsmedmar
closed
6 years ago
0
Travis
#2
juanesarango
closed
6 years ago
0
Initial Update
#1
pyup-bot
closed
6 years ago
0