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Hello,
For GO annotations and network representation (we're using esyN - www.esyn.org), we would find it very useful to have a set of PRO entries for S. pombe complexes. We maintain a list of GO ce…
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hello,
I work TFpredict with interproscan-5.52-86.0 and latest blast in conda environment, with followed commands;
java -jar ~/Softwares/Miniconda3/DeepTFactor/TFpredict/dist/TFpredict_1.3.jar \
…
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```
Compartment volumes cannot be defined as functions that can change in time.
This makes it difficult to model scenarios such as cell growth or endocytosis.
Note that BNG does actually allow the v…
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Hi!
Thank you so much for implementing this. My lab has had the [set transformer](https://arxiv.org/abs/1810.00825) on the radar for a bit since we have some permutation invariant data we are work…
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### Version
1
### DataCap Applicant
Encyclopedia of DNA Elements (ENCODE)
### Project ID
ENCODE01
### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Reg…
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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?**
- [x] Yes
…
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Hi, I just report problematic named entities I found using `en_core_sci_sm`, to improve the model. Most of them contain unbalanced brackets.
```
(-2)-0-(+2
(-8
(= control values
(= controls
(=…
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### Contribution guidelines
- [X] I've read the [contribution guidelines](https://github.com/squidfunk/mkdocs-material/blob/master/CONTRIBUTING.md) and wholeheartedly agree
### I've found a bug and …
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From: Anne Carpenter
Date: Fri, Dec 1, 2023 at 2:44 PM
Hi Ardigen/Ksilink,
Using this attached plot from Ardigen of the top 25 most anti-correlated pairs, I saw MYT1-RNF41.
So, I found someon…
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I think we still have tools in distribution that would profit from being migrated to the TS. What do others think?
e.g.:
https://github.com/galaxyproject/galaxy/pull/588
Tools in the distributi…