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Hi,
thanks for your great contributions to the genetic correlations of UKBB phenotypes!
My work was inspired by the results of the genetic correlations websites and I want to cite it.
Is there a…
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Hi Florian,
I am trying to use bigsnpr for ChrX data (non-PAR region). However, when trying to load the data, I encounter an error in the snp_readBGEN function that I've not seen here before:
`ter…
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Hello,
Thanks so much for another great stat gen package! I'm hoping to run SuSiEx with LD reference taken from the UKBB LD block matrices, which are precomputed. I already have LD matrices for the…
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I found a problem when using the scale_color_identity function with version 3.5 of ggplot2
With previous versions of ggplot2 the plots I have generated have looked like this (see the legend)
![i…
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Hi, I would like to make a test with your script.
I have extracted fields needed from UKBB, but it's not clear which format you use for the input .csv file.
As there are multiple instances and/or ar…
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where is dataset: cardiac_new,i cant find it.
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This ticket collects requested modification to the summary statistics data module. As multiple functions for different datasources generates summary statistics, it is very important to any updates has…
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Dear all,
I'm trying to run your singularity container for UK biobank MRI data preprocessing. I downloaded the container and followed the instructions to modify init_vars before running the pipeline …
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Hi,
How you recommend to save the Manhattan plots? pdf("..") dev.off() method is too slow.
Many thanks,
Zhanna
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Hi,
I am trying to impute a small region on chromosome 21 using a custom reference panel of ~500 individuals. I receive the following error:
```
$ ssimp-linux-0.3 \
> --gwas chr21chunk.txt \
…