McIntosh-Lab tvb-ukbb issues

McIntosh-Lab / tvb-ukbb

TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline

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issues

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Adding VBM changes, add study-specific GM template, replacing FIX training file

#196 justinliuyuwang closed 3 months ago
0
Moving subpipe-level logs to subject/logs/ and making logging bugfixes

#195 justinliuyuwang closed 3 months ago
0
Create config.yml

#192 justinliuyuwang closed 7 months ago
0
⭐ ⭐ ⭐ READ FIRST: Please direct any questions and help requests to our Discussions Page ⭐ ⭐ ⭐

#191 justinliuyuwang opened 7 months ago
0
init_vars

#190 Bea9619 closed 8 months ago
3
Tract length matrices differ depending on probtrackx implementation (GPU, GPU batch, CPU, CPU batch)

#188 justinliuyuwang opened 1 year ago
0
Adni3 dev to ADNI3

#187 justinliuyuwang closed 4 months ago
2
Reparcellation

#185 justinliuyuwang opened 1 year ago
1
GPU toggle in init_vars requires testing

#184 justinliuyuwang opened 1 year ago
0
Output folder

#181 marcellamontagnese closed 1 year ago
1
Diffusion data acquired in the reverse phase encode direction

#179 hellenmir closed 1 year ago
1
[MAINT] modify requirements.txt version numbers

#174 noahfl closed 2 years ago
0
Create CODE_OF_CONDUCT.md

#168 noahfl closed 2 years ago
0
eddy_cuda error when using singularity container. SLURM script and error message attached

#164 yilewang closed 2 years ago
4
Question about input file of the `tvb_FC` script to calculate the FC matrix

#163 yilewang closed 2 years ago
5
Parcellation-Specific Pipeline Modularization, Reparcellation Tool, Various New Pipeline Tools, QC Report Updates

#158 justinliuyuwang closed 2 years ago
0
Parcellation-Specific Pipeline Modularization, Reparcellation Tool, Various New Pipeline Tools, QC Report Updates

#157 justinliuyuwang closed 2 years ago
0
Adding new coarser parcellation

#156 shen4brains closed 2 years ago
0
merge ADNI3 changes into main

#152 noahfl closed 2 years ago
0
implement GPU batching and CPU batching features and add toggle in init_vars

#151 noahfl closed 2 years ago
0
ADNI3 DWI bugfix

#150 noahfl closed 2 years ago
0
Figure out how to handle requirements.txt

#149 noahfl opened 2 years ago
0
merge ADNI3 into main

#144 noahfl closed 2 years ago
0
Cam can slurm dev to Cam can slurm

#143 justinliuyuwang closed 2 years ago
0
Adni3 slurm dev

#142 justinliuyuwang closed 2 years ago
0
Merging Cam-CAN_slurm_dev with new agespec in T1 space, IDP tsv creation bugfix, fieldmap erosion fix

#141 justinliuyuwang closed 3 years ago
0
fixing fieldmaps and subject-specific detection

#140 shen4brains closed 3 years ago
0
age depend field map image sol' and b0 unwarping QC underlay fix

#139 justinliuyuwang closed 3 years ago
0
merging Cam-CAN_slurm_dev to Cam-CAN_slurm

#138 justinliuyuwang closed 3 years ago
0
Merging Cam-CAN_slurm_dev to Cam-CAN_slurm

#137 justinliuyuwang closed 3 years ago
0
fix task fMRI design.fsf for Cam-CAN

#136 shen4brains closed 3 years ago
0
including cerebellum and brainstem into dMRI tractography exclude mask

#135 shen4brains closed 3 years ago
0
add SynB0 unwarping to ADNI3_slurm_dev branch

#134 shen4brains closed 3 years ago
0
Syn b0 dev

#133 shen4brains closed 3 years ago
1
merging adni3_wQC to adni3_dev

#132 justinliuyuwang closed 3 years ago
0
Merging Cam-CAN_FASTwPriors into Cam-CAN

#131 justinliuyuwang closed 3 years ago
0
Merging Cam-CAN_wQC into Cam-CAN

#130 justinliuyuwang closed 3 years ago
0
added non-batch flag for probtrackx2; filepath changes

#129 noahfl closed 3 years ago
0
FEAT design.fsf needed for Cam-CAN task

#128 shen4brains closed 3 years ago
1
no study-specific GM template created for VBM

#127 shen4brains opened 3 years ago
0
ADNI3 slurm with new FIX version

#126 noahfl closed 3 years ago
1
new atlas labels created if subject GM voxel undefined in reference parcellation

#125 shen4brains opened 3 years ago
2
multichannel FAST tissue segmentation output filenames inconsistently assigned to different tissue classes

#124 shen4brains closed 3 years ago
0
extra GM volume IDPs generated if ROI mask indices not contiguous

#123 shen4brains closed 2 years ago
1
Cam can multi channel fast

#122 shen4brains closed 3 years ago
0
Merging QC_dev to master

#121 justinliuyuwang closed 3 years ago
0
missing images for dMRI distortion correction

#120 shen4brains closed 2 years ago
2
individual subpipe submissions don't return jobID

#119 shen4brains closed 3 years ago
1
fixes to batch script - handles empty subjects

#118 noahfl closed 3 years ago
0
Ppmi w qc

#117 shen4brains closed 3 years ago
1