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McIntosh-Lab
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tvb-ukbb
TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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add support for ADNI3 without T2
#116
shen4brains
closed
3 years ago
0
Merging final ADNI3 dev branch fixes into ADNI3 branch
#115
shen4brains
closed
3 years ago
0
add structural processing support for ADNI3 cases without T2 FLAIR
#114
shen4brains
closed
3 years ago
1
figure out policy on contributions / dataset branches
#113
noahfl
opened
3 years ago
1
improper handling of dwi by file manager
#112
shen4brains
closed
3 years ago
3
irrelevant warnings for dMRI B0 unwarping / TOPUP requirements
#111
shen4brains
closed
3 years ago
2
re-implement TBSS module in Cam-CAN and ADNI3 pipes and test
#110
shen4brains
closed
3 years ago
2
user specification of .RData file not obvious
#109
shen4brains
closed
2 years ago
3
lookup table & label image for TVB_SchaeferTian parcellation don't match
#107
shen4brains
closed
3 years ago
1
cerebellum and brainstem incorrectly labelled
#106
shen4brains
closed
3 years ago
5
add support for creating TVB-friendly inputs
#105
shen4brains
closed
3 years ago
0
move eddy_QUAD job to QC module
#104
shen4brains
closed
3 years ago
1
added new IDP output for number of fMRI volumes
#103
noahfl
closed
3 years ago
0
add support for reorganizing into BIDS standard post-processing
#102
shen4brains
opened
3 years ago
2
update default TVB parcellation
#101
shen4brains
closed
3 years ago
1
bad interpreter error in latest Cam-CAN commit
#100
shen4brains
closed
3 years ago
4
add calculation of SC probability matrix as part of diffusion subpipe output
#99
shen4brains
closed
3 years ago
2
field map registrations to T1 can be poor
#98
shen4brains
closed
3 years ago
1
test if fsl_sub can be replaced with qsub
#97
noahfl
closed
3 years ago
2
incorrect reference to parcellation image in diffusion subpipe
#96
shen4brains
closed
3 years ago
1
fix FEAT for cam-CAN
#95
shen4brains
closed
3 years ago
0
FEAT not running properly for Cam-CAN
#94
noahfl
closed
3 years ago
1
multiple tfMRI jobs submitted for dataset with single tfMRI file
#93
shen4brains
closed
3 years ago
1
iterative fMRI not reflected in job name
#92
shen4brains
closed
3 years ago
1
add eddy_quad for eddyQC on individual data
#91
shen4brains
closed
3 years ago
0
add eddy_quad for eddyQC on individual data
#90
shen4brains
closed
3 years ago
0
add eddy_quad for individual eddyQC outputs
#89
shen4brains
closed
3 years ago
0
merge fmap changes into Cam-CAN branch
#88
noahfl
closed
3 years ago
0
ADNI3 hi-res fMRI/dwi data may be processed instead of downsampled versions
#87
shen4brains
closed
3 years ago
4
fix module mapping
#86
shen4brains
closed
3 years ago
0
brain extraction of fieldmap magnitude image not great
#85
shen4brains
closed
3 years ago
1
no classifier training file for BIANCA
#84
shen4brains
closed
3 years ago
1
B0mask fix
#83
shen4brains
closed
3 years ago
0
B0mask fix
#82
shen4brains
closed
3 years ago
0
B0mask fix
#81
shen4brains
closed
3 years ago
0
inconsistent variable names, script names & hard-coded things
#80
shen4brains
opened
3 years ago
3
FEAT processing of task-fMRI data incomplete
#79
shen4brains
closed
3 years ago
2
added /opt/HCPpipelines-4.1.3/fsl to T1 reorient command
#78
shen4brains
closed
3 years ago
0
Cam can t1 fixes
#77
shen4brains
closed
3 years ago
0
poor T1 to MNI registrations
#76
shen4brains
closed
3 years ago
1
add eddyQC support
#75
shen4brains
closed
3 years ago
4
add subcortical volume calculations to IDP/QC subpipe
#74
shen4brains
closed
4 years ago
2
remove T1 defacing
#73
shen4brains
closed
4 years ago
0
T2 (not FLAIR) support needed
#72
shen4brains
closed
3 years ago
3
Poor brain extractions in older adult data
#71
shen4brains
closed
3 years ago
5
probtrackx2 very slow and runs serially instead of in parallel
#70
noahfl
closed
3 years ago
4
downsampled ADNI3 DWI data not detected by file manager
#69
shen4brains
closed
3 years ago
3
improved file parsing for camCAN. fix fix to follow
#68
noahfl
closed
4 years ago
0
changed probtrackx to max memory queue
#67
shen4brains
closed
4 years ago
0
no probtrackx2 diffusion subpipe outputs for ADNI3 subjects
#66
shen4brains
closed
4 years ago
1
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