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McIntosh-Lab
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tvb-ukbb
TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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Add gradient echo fieldmap correction (e.g., camCAN fMRI)
#65
shen4brains
closed
3 years ago
0
add support for processing multiple resting-state/task fMRI files
#64
noahfl
closed
3 years ago
2
T1 processing doesn't complete if no T2 data are available
#63
shen4brains
closed
3 years ago
1
add support for training own .RData file
#62
noahfl
opened
3 years ago
1
change BB_BIN_DIR to reflect new repo name
#61
noahfl
closed
3 years ago
0
Release ready
#60
noahfl
closed
3 years ago
1
last updates before release; fixes to fix and file manager. see:
#59
noahfl
closed
3 years ago
1
Final fixes
#58
shen4brains
closed
3 years ago
0
final fix for init_vars and fix before 1.0
#57
noahfl
closed
3 years ago
0
improved documentation for bb_FC
#56
shen4brains
closed
3 years ago
0
fixed error messages
#55
shen4brains
closed
3 years ago
0
Final fixes
#54
shen4brains
closed
3 years ago
0
R fix
#53
noahfl
closed
3 years ago
0
fixed parcellation calls in diffusion subpipe
#52
shen4brains
closed
3 years ago
0
added workaround for massive bedpostx log issue
#51
noahfl
closed
3 years ago
0
fix IDP subpipe
#50
shen4brains
closed
3 years ago
0
define subcortical GM using FIRST outputs
#49
shen4brains
closed
3 years ago
0
New parcel
#48
shen4brains
closed
3 years ago
0
add TVB414 parcellation and generalize parcellation calls
#47
shen4brains
closed
3 years ago
0
fix parcellation labelling and FC matrix
#46
shen4brains
closed
3 years ago
0
finally fixed bedpostx to submit in parallel
#45
shen4brains
closed
3 years ago
0
[known issue] fsl_sub version for bb_bedpostx_gpu is different
#44
shen4brains
closed
3 years ago
0
changed fsl_sub of bedpostx
#43
shen4brains
closed
3 years ago
0
added MATLAB_COMPILER_RUNTIME env var and pointed it to the correct d…
#42
noahfl
closed
3 years ago
0
fixed relative/absolute file path issue with some of the environment …
#41
noahfl
closed
3 years ago
0
found FIX training data
#40
shen4brains
closed
3 years ago
0
use qsub for bedpostx to parallelize
#39
shen4brains
closed
3 years ago
2
missing UKBB training data for ICA_FIX
#38
shen4brains
closed
3 years ago
0
fixed matlab directory
#37
shen4brains
closed
3 years ago
0
Func pipe rollback
#36
shen4brains
closed
3 years ago
0
fix FSL_FIXDIR typo
#35
shen4brains
closed
3 years ago
0
updated FSL_FIXDIR
#34
shen4brains
closed
3 years ago
0
Func pipe mods
#33
shen4brains
closed
3 years ago
0
Diff pipe mods
#32
shen4brains
closed
3 years ago
0
Diff pipe mods
#31
shen4brains
closed
4 years ago
0
[known issue] bb_NODDI missing file requirements
#30
shen4brains
closed
3 years ago
1
[known issue] /opt/HCPpipelines version of eddy_openmp throws errors
#29
shen4brains
closed
3 years ago
1
fixed issue where SWI PID (-1 since we don't run it right now) was cl…
#28
noahfl
closed
4 years ago
0
fsl_sub doesn't run bb_pre_eddy properly
#27
shen4brains
closed
4 years ago
3
added dwi data location and brain masking to pre-eddy
#26
shen4brains
closed
4 years ago
1
fixed issue with config not reflecting single-direction DWI. now look…
#25
noahfl
closed
4 years ago
0
module gradunwarp.core.unwarp_resample_half_voxel is missing
#24
noahfl
closed
3 years ago
1
added needed files for BIANCA from UKBB website
#23
noahfl
closed
4 years ago
2
fixed version of all.q update from bigmem_16.q
#22
noahfl
closed
4 years ago
0
reverted to all.q at Tony's suggestion; more general compute power al…
#21
noahfl
closed
4 years ago
1
bianca_class_data not found and not available on UK Biobank website
#20
noahfl
closed
4 years ago
2
added lower cases regexes for both tfMRI and rfMRI
#19
noahfl
closed
4 years ago
0
pipeline doesn't run fMRI subpipe
#18
shen4brains
closed
4 years ago
12
fixed directory typo
#17
shen4brains
closed
4 years ago
0
fixed BASH error handling so full T2 processing can run
#16
noahfl
closed
4 years ago
0
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