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McIntosh-Lab
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tvb-ukbb
TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
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Adding VBM changes, add study-specific GM template, replacing FIX training file
#196
justinliuyuwang
closed
2 weeks ago
0
Moving subpipe-level logs to subject/logs/ and making logging bugfixes
#195
justinliuyuwang
closed
3 weeks ago
0
Create config.yml
#192
justinliuyuwang
closed
5 months ago
0
⭐ ⭐ ⭐ READ FIRST: Please direct any questions and help requests to our Discussions Page ⭐ ⭐ ⭐
#191
justinliuyuwang
opened
5 months ago
0
init_vars
#190
Bea9619
closed
5 months ago
3
Tract length matrices differ depending on probtrackx implementation (GPU, GPU batch, CPU, CPU batch)
#188
justinliuyuwang
opened
1 year ago
0
Adni3 dev to ADNI3
#187
justinliuyuwang
closed
1 month ago
2
Reparcellation
#185
justinliuyuwang
opened
1 year ago
1
GPU toggle in init_vars requires testing
#184
justinliuyuwang
opened
1 year ago
0
Output folder
#181
marcellamontagnese
closed
1 year ago
1
Diffusion data acquired in the reverse phase encode direction
#179
hellenmir
closed
1 year ago
1
[MAINT] modify requirements.txt version numbers
#174
noahfl
closed
1 year ago
0
Create CODE_OF_CONDUCT.md
#168
noahfl
closed
2 years ago
0
eddy_cuda error when using singularity container. SLURM script and error message attached
#164
yilewang
closed
2 years ago
4
Question about input file of the `tvb_FC` script to calculate the FC matrix
#163
yilewang
closed
2 years ago
5
Parcellation-Specific Pipeline Modularization, Reparcellation Tool, Various New Pipeline Tools, QC Report Updates
#158
justinliuyuwang
closed
2 years ago
0
Parcellation-Specific Pipeline Modularization, Reparcellation Tool, Various New Pipeline Tools, QC Report Updates
#157
justinliuyuwang
closed
2 years ago
0
Adding new coarser parcellation
#156
shen4brains
closed
2 years ago
0
merge ADNI3 changes into main
#152
noahfl
closed
2 years ago
0
implement GPU batching and CPU batching features and add toggle in init_vars
#151
noahfl
closed
2 years ago
0
ADNI3 DWI bugfix
#150
noahfl
closed
2 years ago
0
Figure out how to handle requirements.txt
#149
noahfl
opened
2 years ago
0
merge ADNI3 into main
#144
noahfl
closed
2 years ago
0
Cam can slurm dev to Cam can slurm
#143
justinliuyuwang
closed
2 years ago
0
Adni3 slurm dev
#142
justinliuyuwang
closed
2 years ago
0
Merging Cam-CAN_slurm_dev with new agespec in T1 space, IDP tsv creation bugfix, fieldmap erosion fix
#141
justinliuyuwang
closed
2 years ago
0
fixing fieldmaps and subject-specific detection
#140
shen4brains
closed
2 years ago
0
age depend field map image sol' and b0 unwarping QC underlay fix
#139
justinliuyuwang
closed
2 years ago
0
merging Cam-CAN_slurm_dev to Cam-CAN_slurm
#138
justinliuyuwang
closed
2 years ago
0
Merging Cam-CAN_slurm_dev to Cam-CAN_slurm
#137
justinliuyuwang
closed
2 years ago
0
fix task fMRI design.fsf for Cam-CAN
#136
shen4brains
closed
3 years ago
0
including cerebellum and brainstem into dMRI tractography exclude mask
#135
shen4brains
closed
3 years ago
0
add SynB0 unwarping to ADNI3_slurm_dev branch
#134
shen4brains
closed
3 years ago
0
Syn b0 dev
#133
shen4brains
closed
3 years ago
1
merging adni3_wQC to adni3_dev
#132
justinliuyuwang
closed
3 years ago
0
Merging Cam-CAN_FASTwPriors into Cam-CAN
#131
justinliuyuwang
closed
3 years ago
0
Merging Cam-CAN_wQC into Cam-CAN
#130
justinliuyuwang
closed
3 years ago
0
added non-batch flag for probtrackx2; filepath changes
#129
noahfl
closed
3 years ago
0
FEAT design.fsf needed for Cam-CAN task
#128
shen4brains
closed
2 years ago
1
no study-specific GM template created for VBM
#127
shen4brains
opened
3 years ago
0
ADNI3 slurm with new FIX version
#126
noahfl
closed
3 years ago
1
new atlas labels created if subject GM voxel undefined in reference parcellation
#125
shen4brains
opened
3 years ago
2
multichannel FAST tissue segmentation output filenames inconsistently assigned to different tissue classes
#124
shen4brains
closed
2 years ago
0
extra GM volume IDPs generated if ROI mask indices not contiguous
#123
shen4brains
closed
2 years ago
1
Cam can multi channel fast
#122
shen4brains
closed
3 years ago
0
Merging QC_dev to master
#121
justinliuyuwang
closed
3 years ago
0
missing images for dMRI distortion correction
#120
shen4brains
closed
2 years ago
2
individual subpipe submissions don't return jobID
#119
shen4brains
closed
2 years ago
1
fixes to batch script - handles empty subjects
#118
noahfl
closed
3 years ago
0
Ppmi w qc
#117
shen4brains
closed
3 years ago
1
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