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failed after 30 tries, and weapon paint and also knife won't work
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Hi,
I run the split chimeric contigs procedure (https://github.com/tanghaibao/jcvi/wiki/ALLMAPS:-How-to-split-chimeric-contigs). Does AllMaps provides any script to convert the initial map.bed file i…
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Dear all,
I ran into problems while running the examples. I was able to run
python -m jcvi.assembly.allmaps merge JMMale.csv JMFemale.csv -o JM-2.bed
but the next command gave me this error:…
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Hi,
I'm desperately trying to reproduce my results, since I did a small change in the assembly before running AllMaps, and unfortunately results are differente of chromosome is over scaffolded. I'm…
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Dear all,
I have done two separate species comparisons against the same reference genome using jcvi.assembly.allmaps. Strangely in the chromosome plots for one of the analysis I do get gray bars in…
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Hi,
when I used test data to test the ALLMAP, and I am sure install all the python modules, but it does not work. The error log is following:
===================================
Traceback (mo…
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Dear community,
I have linkage map output file generated by MSTmap. When I used ``python -m jcvi.assembly.geneticmap`` to convert .out file to .bed file, I got the error.
The input file for pyth…
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I currently have Unreal Engine 4.23.1 installed on my Linux (Ubuntu 18.04) system. I am trying to run your microservices grpc demo but am facing the following error:
------- Build details --------
…
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Hi,
AllMaps was very successfully able to super-scaffold my assembly using the synteny map with a reference genome. AllMaps scaffolded my scaffolds into 21 pseudochromosomes + 276 minor scaffolds. …
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Dear Authors,
I have an issue when I run the software. The problem is when the allmaps.py script calls liftOver from the grid. I tried to run liftOver on the grid calling the only the software from th…