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Thanks for the very helpful package.
I am confused at the part of the pseudotime analysis in the tutorial of DG.
What do the root cells and end cells mean exactly? And how to to deal with branch…
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Would be nice if the string matching in the NodeSet functionality (and by extension, I guess, attribute matching) could perform a glob match to not have to specify dozens of values.
(spin off from …
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Hello it's me again 😄
So I've tried to continue my grouped and integrated analysis using only 2 samples and during both steps **Int_Clust_Markers_Annot_GE** and **Grp_Clust_Markers_Annot_GE** afte…
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In some project, samples are from different batch(sequencing centre, different date, etc.) and might have different strand protocol. We currently implicitly detected the strandness of the sample by c…
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I would like to request the term "olfactory ensheathing cell" to be imported from the The BRENDA Tissue Ontology:
http://purl.obolibrary.org/obo/BTO_0002771
**Preferred term label:**
olfactory en…
anjaf updated
3 years ago
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Hi again,
I was trying to run the scID to identify cluster in a dataset based on a published list of marker genes:
```R
scID_output_zhang signif(.Machine$double.xmax, 6)) { :
missing value …
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Having difficulties understanding:
http://noctua-dev.berkeleybop.org/editor/graph/gomodel:R-HSA-112311?
![image](https://user-images.githubusercontent.com/50745/98335677-43fd8b80-1fba-11eb-94b9-…
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I want to compare astrocytes, oligodendrocytes, microglia, excitatory neurons, inhibitory neurons, OPCs, and vascular leptomeningeal cells. I added metadata columns containing the celltype and whethe…
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Hello @kdzimm et al.,
Thank you for providing this excellent resource for incorporating a random effect for individual when running MAST for single-cell differential expression analyses. After load…