theislab scvelo issues - Githubissues

theislab / scvelo

RNA Velocity generalized through dynamical modeling

https://scvelo.org

BSD 3-Clause "New" or "Revised" License

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issues

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Question on normalisation

#1259 miktrinh opened 3 days ago
0
UMAP coordinates not transfering from Seurat

#1258 MeganRMonaghan closed 3 days ago
1
A task has failed to un-serialize. Please ensure that the arguments of the function are all picklable.

#1257 christophechu closed 6 days ago
1
Fix/print versions

#1256 Oisin-M opened 1 week ago
0
Dependency problem on packages optax & chex

#1255 jasonleongbio closed 1 week ago
1
can scvelo compare normal and diseased ( different stages)? why unspliced are more than spliced?

#1254 Flu09 closed 1 week ago
0
Shape of phase plot(U-S) changes after scv.pp.moments(adata)

#1253 yuzzini closed 2 weeks ago
1
Update `utils.py`

#1252 WeilerP closed 2 weeks ago
0
Import error with `numpy>=2.0`

#1251 WeilerP closed 2 weeks ago
0
Significant cell count reduction after merging loom files with scvelo.merge

#1249 mayurdoke6 closed 2 weeks ago
1
Significant cell count reduction after merging loom files with scvelo.merge

#1248 mayurdoke6 closed 2 weeks ago
1
Export the neighbor graph from integrated Seurat objective and import to scvelo

#1245 Alvis-Jiang closed 1 month ago
0
Velocyto in sc-RNAseq coupled TCRseq on 5'

#1244 Baldosisley closed 2 weeks ago
0
scv.tl.velocity_graph(adata) has bug that it can't be run

#1243 rabbitpang closed 2 months ago
1
scv.read(adata.h5ad) does not load spliced and unspliced layers

#1242 mdu4003 closed 2 months ago
3
scv.tl.paga

#1241 hvgogogo opened 2 months ago
4
AttributeError: module 'scvelo' has no attribute 'pp'

#1240 Kalpi-ds closed 2 months ago
1
More information about scvelo.datasets

#1239 mortunco closed 2 months ago
1
scv.pl.proportions() -- "axis 1 is out of bounds for array of dimension 1"

#1237 Alvis-Jiang opened 2 months ago
0
an error in failing to save stream figures aftering installing some packages like "mpi4py petsc petsc4py"

#1236 Shiywa opened 2 months ago
0
TypeError: Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices'.

#1235 cnwokolo24 closed 2 months ago
4
Make progress bar optional

#1234 WeilerP closed 2 months ago
0
Fix neighbors calculation

#1233 WeilerP closed 2 months ago
0
AttributeError: module 'scvelo' has no attribute 'DataFrame'

#1232 jwalewski closed 2 months ago
1
Fix/get df with default args

#1231 Oisin-M closed 2 months ago
1
Fix/compute_neighbors, issue #1212

#1229 Abelgurung closed 2 months ago
1
add VELOVI preprocess methods

#1228 martinkim0 opened 3 months ago
1
cannot use module of scvelo after import in Spyder

#1227 yulchen810 closed 3 months ago
1
Update `pyproject.toml`

#1226 WeilerP closed 3 months ago
0
Setuptools incorrectly set up

#1225 WeilerP closed 3 months ago
0
Update `pyptoject.toml`

#1224 WeilerP closed 3 months ago
0
scvelo release version is hard coded

#1223 WeilerP closed 3 months ago
0
Remove `debug.py`

#1222 WeilerP closed 3 months ago
0
Update `release.yml`

#1221 WeilerP closed 3 months ago
0
Build not installed in release CI

#1220 WeilerP closed 3 months ago
0
Update `VELOVI::train`

#1219 WeilerP closed 3 months ago
0
Outdated `use_gpu` argument for VELOVI.train

#1218 WeilerP closed 3 months ago
0
Update `plotting/utils.py::hist`

#1217 WeilerP closed 3 months ago
0
Unable to import scvelo

#1216 jjia1 closed 3 months ago
2
Need help with the parsing of stream plot result

#1215 NikTuzov closed 3 months ago
1
Too many dependencies are being installed

#1214 LouisFaure closed 4 months ago
2
Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices'

#1212 akhst7 closed 2 months ago
7
Updated PR: Also includes saving functionality for scv.pl.hist()

#1211 jwalewski closed 3 months ago
1
[Feature Request] Adding Save Functionality For scv.pl.hist()

#1210 jwalewski closed 3 months ago
0
TypeError: unsupported operand type(s) for -: 'str' and 'str'

#1209 suhuanhou closed 3 months ago
1
harmony

#1208 Flu09 closed 4 months ago
0
scv.tl.rank_velocity_genes() Doesn't Rank All Genes

#1207 jwalewski opened 4 months ago
1
python stuck while running sc.tl.velocity_graph with 0% progress but without showing error

#1206 didiren closed 4 months ago
3
Update `scatter` and `update_axes`

#1205 WeilerP closed 4 months ago
0
Add option to set aspect in scatter plots

#1204 WeilerP closed 4 months ago
0