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Dear developers,
Thank you very much for the useful tool. I built Python2.7 with conda, and configure the 'usr_path.ini' file for my environment.
Then I run `python NeoPredPipe.py -I ./Example/i…
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After taking a look at your code I realised that you only provide inference functionality with pre-trained models.
Are you planning on releasing code with the implementation of your training proc…
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Hi ,
I am trying to train models for Class1 prediction for allele specific model using mhcflurry-class1-train-allele-specific-models. Here are some of the questions I have.
1) What is the format …
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Greetings sir,
I want to use DeepPurpose for Virtual screening using drugs downloaded from databases with a certain protein.
Can you give me information on how to do this? such as the preparati…
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Hi developers, first of all thank you for putting together this resource.
I am trying to run the NeoRecoPo.py and I am getting some errors. Before detailing those errors, I just want to make sure t…
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Hello, if I have the sequences of a given protein and the smiles of a given drug, how can I use your DeepDTA program to predict the drug–target binding affinity? Look forward to your reply.
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We should try to make sure we have covered the important points from previous reviews (or reject the points because they are beyond scope or wrong), and also referred to them for certain information t…
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v0.5 Release
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[Enhancement] Distributed GNN training
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- [ ] Enable distributed computation for all core sampling/randomwalk APIs
- [ ] Distributed graph store design and implementation
- […
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Dear author(s),
I am wondering the following:
MixMHCpred for class-I has both a Score_bestAllele and a %Rank_bestAllele that both give very different outputs.
MixMHC2pred for class-II has just a …