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DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
https://doi.org/10.1093/bioinformatics/btaa1005
BSD 3-Clause "New" or "Revised" License
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ERROR: No matching distribution found for pytorch-lightning==1.8.3
#179
TangYiChing
closed
1 week ago
0
ModuleNotFoundError: No module named 'descriptastorus'
#178
reni8911
opened
3 months ago
0
changing the deprecated argument error_bad_lines to on_bad_lines of r…
#177
gittymo97
opened
4 months ago
0
HTTPError
#176
Pratanukayet
opened
6 months ago
0
error when using TDC dataset to predict DTI
#175
XWcode11
opened
6 months ago
0
The meaning of the score in the document 'toy_data/ppi.txt'
#174
ke-ning
opened
6 months ago
0
Confusion matrix
#173
tompapgr
opened
10 months ago
0
Update installation guide in 2023
#172
sniperyyc
opened
11 months ago
0
duplicate issue
#171
cfsmile
closed
1 year ago
0
validation curve plot
#170
misgana30
opened
1 year ago
0
Install ERROR: Could not find a version that satisfies the requirement rdkit (from descriptastorus)
#169
holeung
opened
1 year ago
2
Dataset - def process_Binding_DB - extra space on "BindingDB Target Chain Sequence"
#168
emanskaia
opened
1 year ago
0
running on GPU
#167
Gabrielhidayat
opened
1 year ago
1
Query Regarding y_pred values
#166
CallMeDek
opened
1 year ago
0
BindingDB: Amino acid sequences and y_pred values
#165
jchen634
opened
1 year ago
2
Fix download of Binding DB database (#160)
#164
jeanpaulrsoucy
closed
1 year ago
1
Query Regarding MPNN Drug Encoder
#163
SudhirGhandikota
opened
1 year ago
3
Accuracy of BindingDB pre-trained models
#162
osession
closed
1 year ago
1
DGL_GCN-Transformer cannot work.
#161
DeepAIDD
opened
1 year ago
1
Error while downloading BindingDB
#160
parthnatekar
closed
1 year ago
1
The GNN model does not work properly
#159
songyu2022
closed
1 year ago
3
Question about data format for prediciton
#158
tomh014
closed
1 year ago
1
Error Message when Using Custom Data
#157
calaism
closed
1 year ago
0
Possible typo in the initialization of the MPNN encoder
#156
diliadis
closed
1 year ago
1
package nbconvert-core-7.2.1-pyhd8ed1ab_0 requires jinja2 >=3.0, but none of the providers can be installed - package nbclient-0.7.0-pyhd8ed1ab_0 requires jupyter_client >=6.1.5, but none of the providers can be installed - nothing provides importlib-metadata >=4.7.0,<4.7.1.0a0 needed by importlib_metadata-4.7.0-hd8ed1ab_0 - package libsqlite-3.39.4-h753d276_0 requires libzlib >=1.2.12,<1.3.0a0, but none of the providers can be installed
#155
32109012
closed
1 year ago
1
fix load path error of model_mpnn_aac_davis in utils.py
#153
0ling
closed
1 year ago
0
Cannot running GNN+Transformer model
#152
yrq3027
opened
1 year ago
3
Error when using DGL_GCN to run DTI model
#151
yrq3027
closed
1 year ago
3
Binding scores
#150
Jameel9
closed
1 year ago
2
Virtual Screening of extrnal library
#149
Jameel9
closed
2 years ago
0
Drug propery prediction format error
#148
Davegdd
closed
1 year ago
4
style: Correct typos on README.md
#147
la1av1a
closed
2 years ago
0
download_BindingDB() 404 error
#146
Jin0331
closed
2 years ago
1
Side effects prediction
#145
greg217
closed
2 years ago
1
BindingDB processing improvements
#144
alex-golts
closed
2 years ago
1
Improve bindingDB processing functions
#143
alex-golts
closed
2 years ago
0
Error when using DGL_GCN
#142
hyojin0912
closed
2 years ago
1
Multi-GPU parallel training leads to model output dimension errors. output==>(Batch_size*N_GPU)
#141
xiaodanyin
closed
2 years ago
1
Feature request: alternative data download options for Chinese users
#140
riversdark
closed
2 years ago
3
QSAR Examples?
#139
naeemmrz
closed
2 years ago
4
How do I use utils.data_process to make random train, val, test subsets?
#138
rjd55
closed
2 years ago
1
Reliability of the model
#137
viko-3
closed
2 years ago
0
about pretrain model for BindingDB
#136
viko-3
closed
2 years ago
0
Creating Visual Changes to Training Process Using tqdm and Fixing Graph-Based Models Issue With Better Memory Managment
#135
yazdanimehdi
closed
10 months ago
6
about virtual screen
#134
viko-3
closed
2 years ago
3
Update dataset.py
#133
Gumgo91
closed
2 years ago
0
About Pretrain_model
#132
viko-3
closed
2 years ago
1
Could not resolve host: github.com
#131
imraaqeel
closed
2 years ago
3
About encoding proteins for DTI
#130
kch38896
closed
2 years ago
1
AttributeError: 'str' object has no attribute 'drug_encoding'
#129
ashcoffee7
closed
2 years ago
5
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