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MeSH has multiple interfaces for resolving entities: https://id.nlm.nih.gov/mesh/.html and https://meshb.nlm.nih.gov/record/ui?ui=. Bioregistry (based on my recommendation a long time ago) adopted the…
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Imported ontologies may contain any number of prefixes, including ones conflicting with other sources.
We should limit sources to expected ones to avoid downstream node conflicts.
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### Prefix
gtdb
### Name
Genome Taxonomy Database
### Homepage
https://gtdb.ecogenomic.org
### Source Code Repository
_No response_
### Description
The Genome Taxonomy Database (GTDB) is an i…
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https://bioregistry.io/registry/mirbase
resolves to:
https://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0026471
not surprising, anything with "cgi-bin" or ".pl" or http params in the URL is…
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https://new.wikipathways.org/pathways/WP4792.html contains two links in the description. On the old page, they were clickable, here it seems they are not correctly formatted to be a clickable link.
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Currently UniProt isoforms resolve to a fairly technical SPARQL endpoint. Example: `uniprot.isoform:Q9H4X1-2` resolves to https://sparql.uniprot.org/sparql/?query=DESCRIBE%20%3chttp://purl.uniprot.org…
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### Prefix
mim
### Explanation
Hi
We (OMIM) wanted to make the following updates to our information:
We want the prefix to be ‘mim’, and the alternatives to be ‘MIM’, ‘omim’ and ‘OMIM’.
T…
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SSSOM allows embedding prefix maps into data to reduce the risk of uncoupled data from prefix maps. For example, we can embed prefix maps into our tsvs files like this:
```
# curie_map:
# FOO…
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It's really good to mention highly used namespaces, but the `taxonomy` prefix is a perfect example of how different communities reuse the same prefix to actually mean different things
Identifiers.o…
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I found a typo in a prefix, but I couldn't figure out what file to fix it in and send a pull request. Could you please let me know and I will send a contribution
https://github.com/obophenotype/pla…